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View Structure Prediction Details

Protein: gi|15231416, gi|...
Organism: Arabidopsis thaliana
Length: 442 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15231416, gi|....

Description E-value Query
Range
Subject
Range
POLR1E - polymerase (RNA) I polypeptide E, 53kDa
365.0 [0..77] [442..90]
gi|114624563 - gi|114624563|ref|XP_001169764.1| PREDICTED: RNA polymerase I associated factor 53 isoform 3 [Pan tro...
364.0 [0..77] [442..86]
gi|73971380 - gi|73971380|ref|XP_531998.2| PREDICTED: similar to RNA polymerase I associated factor 53 isoform 1 [...
361.0 [0..77] [442..28]
gi|157817813, gi... - gi|165970698|gb|AAI58700.1| Polymerase (RNA) I polypeptide E [Rattus norvegicus], gi|157817813|ref|N...
360.0 [0..77] [442..43]
gi|74268164, gi|... - gi|77735763|ref|NP_001029580.1| polymerase (RNA) I polypeptide E, 53kDa [Bos taurus], gi|74268164|gb...
359.0 [0..77] [442..28]
gi|12328816, gi|... - gi|74208995|dbj|BAE21232.1| unnamed protein product [Mus musculus], gi|148670464|gb|EDL02411.1| poly...
354.0 [0..77] [442..43]

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Predicted Domain #1
Region A:
Residues: [1-165]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGEEKNDYR NEEEDFNTPQ QLQKKQRKGK KIATETEDEN EEDKRVTLKV TQVAERPDRI  60
   61 SPIVAYFSTG YDPCKVDPKT GKRVHETPKV TVYKHKDDSK KRIQVVVSPP GARVEFVGTN 120
  121 YTGEQAAMQT NTYRVGVFNR EAKTLRILPV AHNKIIRLEP RVKAQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [166-303]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETNEEEASGS AVVKELEELK TGERDRYNTK KAVTRDKKKR ALYMGDDAAT QKVLDGKLSE  60
   61 LGVNTAALEG TSSTVARNIP PYNTAATTAN EAYPLEKIIE KGDWSFLEDI YWLLQQETEA 120
  121 ATEAYPVFVR NRLYRLRD

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [304-442]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IKDDMKKQTV CGAATLLTHL VKFKDRNSMN GYDSAKDHKM PDIFRQKFNS MFKDSESDRI  60
   61 PVDKINLLIS YVLVLSLHVD NFMTDPEDIA KDLRISTVEL RKHFLQLGCK FLKQNSTTVA 120
  121 TLPTPLNFPE VNRRRRARK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle