YRC Public Data Repository - Protein Structure Prediction

Protein:	ARAS2_ARATH
Organism:	Arabidopsis thaliana
Length:	441 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ARAS2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|22655054 - gi\|22655054\|gb\|AAM98118.1\| unknown protein [Arabidopsis thaliana]	323.0	[0..1]	[441..1]
gi\|25519610 - gi\|25519610\|pir\|\|C97527 hypothetical protein AGR_C_2553 [imported] - Agrobacterium tumefaciens (stra... gi\|15888706, gi\|... - gi\|15888706\|ref\|NP_354387.1\| hypothetical protein AGR_C_2553 [Agrobacterium tumefaciens str. C58], g...	254.0	[0..69]	[435..31]
gi\|93456440, gi\|... - gi\|94263222\|ref\|ZP_01287039.1\| Peptidase M50, putative membrane-associated zinc metallopeptidase [de...	249.0	[0..79]	[435..1]
gi\|110548144, gi... - gi\|222054613\|ref\|YP_002536975.1\| membrane-associated zinc metalloprotease [Geobacter sp. FRC-32], gi...	248.0	[0..79]	[438..1]
gi\|86749938, gi\|... - gi\|86749938\|ref\|YP_486434.1\| peptidase M50, putative membrane-associated zinc metallopeptidase [Rhod...	247.0	[0..63]	[434..1]
gi\|51245013, gi\|... - gi\|51245013\|ref\|YP_064897.1\| hypothetical protein DP1161 [Desulfotalea psychrophila LSv54], gi\|50876...	247.0	[0..79]	[435..1]
gi\|78695198, gi\|... - gi\|78695198\|ref\|ZP_00859710.1\| Peptidase M50, putative membrane-associated zinc metallopeptidase [Br...	246.0	[0..63]	[434..1]

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Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLNISSSPI SHRIPHFLSD FNNPTSNFPP KSKTHLPKSN LSTLSNHSLY GTKNRAFYKN  60
   61 KRNPYNRTQA LGRFDFGSLE SVLEASAVLT AIIVVHETGH FLAASLQGIR VSKFAIGFGP 120
  121 ILAKFN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.387	a.24.9	alpha-catenin/vinculin
View	Download	0.381	d.33.1	Bacterial protein-export protein SecB
View	Download	0.374	d.33.1	Bacterial protein-export protein SecB
View	Download	0.357	d.101.1	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
View	Download	0.357	d.101.1	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domains 2 and 5
View	Download	0.345	d.33.1	Bacterial protein-export protein SecB
View	Download	0.338	d.33.1	Bacterial protein-export protein SecB
View	Download	0.311	d.33.1	Bacterial protein-export protein SecB
View	Download	0.292	a.7.1	Spectrin repeat

Predicted Domain #2

Region A:
Residues: [127-441]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNNVEYSLRA FPLGGFVGFP DNDPDSDIPV DDRNLLKNRP ILDRVIVVSA GIVANVIFAY  60
   61 AIIFTQVVSV GLPVQESFPG VLVPDVKSFS AASRDGLLPG DVILAVDGTE LSNSGSDSVS 120
  121 KVVDVVKRNP EHNVLLRIER GKESFEIRIT PDKSFDGTGK IGVQLSPNVR FGKVRPKNIP 180
  181 ETFSFAGREF FGLSYNVLDS LKQTFLNFSQ TASKVAGPVA IIAVGAEVAR SNADGLYQFA 240
  241 ALLNLNLAVI NLLPLPALDG GTLALILLEA VRGGRKLPLE VEQGIMSSGI MLVLFLGLFL 300
  301 IVKDTLNLDF IKEML

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.221849
Match:	1fc6A
Description:	Photosystem II D1 C-terminal processing protease
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits