YRC Public Data Repository - Protein Structure Prediction

Protein:	CR15B_ARATH
Organism:	Arabidopsis thaliana
Length:	141 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CR15B_ARATH.

Description	E-value	Query Range	Subject Range
gi\|85118928 - gi\|85118928\|ref\|XP_965543.1\| hypothetical protein NCU01912 [Neurospora crassa OR74A] gi\|32417248, gi\|... - gi\|32417248\|ref\|XP_329102.1\| hypothetical protein [Neurospora crassa], gi\|28927353\|gb\|EAA36307.1\| hy...	114.0	[0..8]	[140..998]
gi\|49146397, gi\|... - gi\|49146397\|ref\|YP_025505.1\| putative phage-related minor tail protein [Caedibacter taeniospiralis],...	97.0	[0..3]	[140..59]
gi\|11358481, gi\|... - gi\|7529728\|emb\|CAB86908.1\| late embryogenesis abundant protein-like [Arabidopsis thaliana], gi\|20465...	91.0	[0..3]	[140..112]
gi\|39590079, gi\|... - gi\|39590079\|emb\|CAE61077.1\| Hypothetical protein CBG04827 [Caenorhabditis briggsae], gi\|187035581\|em... gi\|157765492 - gi\|157765492\|ref\|XP_001675089.1\| Hypothetical protein CBG04827 [Caenorhabditis briggsae AF16]	89.0	[0..5]	[136..301]
gi\|20126722 - gi\|20126722\|dbj\|BAB88877.1\| late embryogenesis-abundant protein [Brassica napus]	87.0	[0..9]	[141..30]
LEAD8_DAUCA - Embryonic protein DC-8 OS=Daucus carota PE=3 SV=1	83.0	[0..4]	[140..260]

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Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMSLSGAVL SGMGSSFHNV GAKQSGVGTV RVGRKSELVV VAQRKKSLIY AVKSDGNILD  60
   61 DLNEATKKAS DFVTDKTKEA LADGEKTKDY IVEKTIEANE TATEEAKKAL DYVTEKGKEA 120
  121 GNKAAEFVEG KAEEAKNATK S

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.34
Match:	1xq8A
Description:	Human micelle-bound alpha-synuclein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits