| Protein: | gi|15219405, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 779 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15219405, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
879.0 | [0..1] | [779..1] |
|
Region A: Residues: [1-241] |
1 11 21 31 41 51
| | | | | |
1 MVSFTGFAFV FGILLGILAI VTAEVVGFLY LLKRLNRKRD RQESNSSSDP NFKSFDPRQS 60
61 IDFSLNKQGV IWILELDENV KDWMKEKLPK EQKKKRVDLL EVHPVRRFAR IKDHKLILSD 120
121 SLDGPQTPIT LKGCFVDAVS GSGPTRKWAK RFPIQVESKT SVLYKGNRVF YIFLETSWEK 180
181 ESWCKALRLA ACENQERFIW STKLKEDFRN YLASLNAAYP SFMKPSAGFS FESLDKGLKA 240
241 D
|
| Detection Method: |  |
| Confidence: | 1.01 |
| Match: | 1dynA |
| Description: | Dynamin |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.46923761062082 | bayes_pls_golite062009 |
| protein binding | 0.127111860178639 | bayes_pls_golite062009 |
|
Region A: Residues: [242-303] |
1 11 21 31 41 51
| | | | | |
1 GPSSKVRLIW KKFSKKCSTK VNFPPSIRDD KKTSSRSYQD SQSTGSSGKS TSARRMQDNI 60
61 PE
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.389 | a.163.1 | Crustacean CHH/MIH/GIH neurohormone |
| View | Download | 0.365 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.310 | a.112.1 | Description not found. |
| View | Download | 0.304 | a.70.1 | N-terminal domain of the delta subunit of the F1F0-ATP synthase |
| View | Download | 0.297 | a.61.1 | Retroviral matrix proteins |
|
Region A: Residues: [304-464] |
1 11 21 31 41 51
| | | | | |
1 ETDVQVISRS WSHSSHASDV DSEDKSFDEG TLALNVVLSR LFFDVKQNTV LKNLVRERIQ 60
61 RIMSNMRIPS YIGELICCDV DIGNLPPYIH GTRILPMEMN GVWAFEIDIE YTGGAGLEVE 120
121 TRVDAREEDL QKGIAEGKLQ PNSAGDVPPD LLEGLADFEK Q
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [465-600] |
1 11 21 31 41 51
| | | | | |
1 LNVPGGTVDA QDVKSGGTDK ADESKGPKGT KTGSSNGSKW KSMLKNIVEQ VSQVPITLSI 60
61 GVSSLRGTLC VHMKPPPSDQ LWFGFTSMPD IEFNLVSSVG EHKITNSHVA MFLVNRFKTA 120
121 IRDVMVLPNC ESVTIP
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
|
Region A: Residues: [601-779] |
1 11 21 31 41 51
| | | | | |
1 WMTAEKDDWV ERNVAPFMWL NQDSTSDREN LEAAEAKSKA DKPPTSEQMQ KTVNIPQKPR 60
61 IEEESVSADT APSANSIALL VESDKSLEEL KTPLLESSEK HDTIARGGSA GDIIPGIGQS 120
121 PSMSTVSGEE DDSNSKGKKM GAAKARMFDF RKKVGEKFEE KKRHVEEKSR QIVEKMRGP
|
| Detection Method: | |
| Confidence: | 1.25 |
| Match: | 1h1kI |
| Description: | THE BLUETONGUE VIRUS (BTV) CORE BINDS DSRNA |
Matching Structure (courtesy of the PDB): |
|
