| Protein: | VDE_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 462 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VDE_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
680.0 | [0..80] | [462..94] |
|
|
669.0 | [0..81] | [462..88] |
|
|
664.0 | [0..85] | [462..108] |
|
|
664.0 | [0..85] | [462..108] |
|
|
662.0 | [0..81] | [462..66] |
|
|
656.0 | [0..78] | [462..102] |
|
|
655.0 | [0..69] | [462..92] |
|
|
649.0 | [0..84] | [462..77] |
|
Region A: Residues: [1-80] |
1 11 21 31 41 51
| | | | | |
1 MAVATHCFTS PCHDRIRFFS SDDGIGRLGI TRKRINGTFL LKILPPIQSA DLRTTGGRSS 60
61 RPLSAFRSGF SKGIFDIVPL
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.735 | b.49.3 | Description not found. |
| View | Download | 0.673 | d.52.8 | Description not found. |
| View | Download | 0.670 | d.93.1 | SH2 domain |
| View | Download | 0.669 | b.1.18 | E set domains |
| View | Download | 0.634 | d.93.1 | SH2 domain |
| View | Download | 0.634 | d.93.1 | SH2 domain |
| View | Download | 0.557 | d.58.4 | Dimeric alpha+beta barrel |
| View | Download | 0.493 | d.93.1 | SH2 domain |
|
Region A: Residues: [81-128] |
1 11 21 31 41 51
| | | | | |
1 PSKNELKELT APLLLKLVGV LACAFLIVPS ADAVDALKTC ACLLKGCR
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.638 | N/A | N/A | a.140.1 | LEM domain |
| View | Download | 0.638 | N/A | N/A | a.140.1 | LEM domain |
| View | Download | 0.638 | N/A | N/A | a.140.1 | LEM domain |
| View | Download | 0.638 | N/A | N/A | a.140.1 | LEM domain |
| View | Download | 0.561 | N/A | N/A | a.140.2 | SAP domain |
| View | Download | 0.550 | N/A | N/A | a.140.3 | Rho termination factor, N-terminal domain |
| View | Download | 0.521 | N/A | N/A | a.140.4 | Recombination endonuclease VII, C-terminal and dimerization domains |
| View | Download | 0.518 | N/A | N/A | a.140.1 | LEM domain |
| View | Download | 0.518 | N/A | N/A | a.140.1 | LEM domain |
|
Region A: Residues: [129-363] |
1 11 21 31 41 51
| | | | | |
1 IELAKCIANP ACAANVACLQ TCNNRPDETE CQIKCGDLFE NSVVDEFNEC AVSRKKCVPR 60
61 KSDLGEFPAP DPSVLVQNFN ISDFNGKWYI TSGLNPTFDA FDCQLHEFHT EGDNKLVGNI 120
121 SWRIKTLDSG FFTRSAVQKF VQDPNQPGVL YNHDNEYLHY QDDWYILSSK IENKPEDYIF 180
181 VYYRGRNDAW DGYGGAVVYT RSSVLPNSII PELEKAAKSI GRDFSTFIRT DNTCG
|
| Detection Method: | |
| Confidence: | 1.47 |
| Match: | 2hzqA |
| Description: | No description for 2hzqA was found. |
|
Region A: Residues: [364-462] |
1 11 21 31 41 51
| | | | | |
1 PEPALVERIE KTVEEGERII VKEVEEIEEE VEKEVEKVGR TEMTLFQRLA EGFNELKQDE 60
61 ENFVRELSKE EMEFLDEIKM EASEVEKLFG KALPIRKVR
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.814 | a.118.8 | TPR-like |
| View | Download | 0.806 | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.806 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.785 | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.735 | a.71.2 | Helical domain of Sec23/24 |
| View | Download | 0.711 | a.80.1 | DNA polymerase III clamp loader subunits, C-terminal domain |
| View | Download | 0.710 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.589 | a.24.17 | Group V grass pollen allergen |
| View | Download | 0.544 | a.71.1 | Endoplasmic reticulum protein ERP29, C-domain |
| View | Download | 0.534 | a.24.13 | Domain of the SRP/SRP receptor G-proteins |
