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View Structure Prediction Details

Protein: FBT1_ARATH
Organism: Arabidopsis thaliana
Length: 560 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FBT1_ARATH.

Description E-value Query
Range
Subject
Range
gi|67668083, gi|... - gi|67668083|ref|ZP_00465278.1| General substrate transporter:Major facilitator superfamily [Burkhold...
226.0 [0..14] [553..928]

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Predicted Domain #1
Region A:
Residues: [1-110]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRSLFSIS ISPSQFTVLP SINNERRRLA IAARSHRLSR RKIRKRPPDR DMSSIVSIPE  60
   61 LPRRRDSEES LLLDSRISVA EGDTSNTDVE GDRDTTSSIR TQPPPRKGRN 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [111-560]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSSSRIKFYG VELSPDNVAV AMVYFVQGVL GLARLAVSFY LKDDLHLDPA ETAVITGLSS  60
   61 LPWLVKPLYG FISDSVPLFG YRRRSYLVLS GLLGAFSWSL MAGFVDSKYS AAFCILLGSL 120
  121 SVAFSDVVVD SMVVERARGE SQSVSGSLQS LCWGSSAFGG IVSSYFSGSL VESYGVRFVF 180
  181 GVTALLPLIT SAVAVLVNEQ RVVRPASGQK ENITLLSPGF LQTSKQNMIQ LWGAIKQPNV 240
  241 FLPTLFIFLW QATPHSDSAM FYFTTNKLGF TPEFLGRVKL VTSIASLLGV GLYNGFLKTV 300
  301 PLRKIFLVTT IFGTGLGMTQ VILVSGFNRQ LGISDEWFAI GDSLILTVLA QASFMPVLVL 360
  361 AARLCPEGME ATLFATLMSI SNGGSVLGGL MGAGLTQAFG ITRDSFGNLS TLIILCNLSS 420
  421 LLPLPLLGLL PRDSPDTLTK DDADVEMKSN 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 39.39794
Match: 1pw4A
Description: Crystal Structure of the Glycerol-3-Phosphate Transporter from E.Coli
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle