YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|9454545, gi\|1...
Organism:	Arabidopsis thaliana
Length:	208 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|9454545, gi|1....

Description	E-value	Query Range	Subject Range
gi\|49080302, gi\|... - gi\|71023979\|ref\|XP_762219.1\| hypothetical protein UM06072.1 [Ustilago maydis 521], ref\|XP_403687.1\| ...	211.0	[0..5]	[207..179]
orf19.2933 - orf19.2933 CGDID:CAL0006014 Assembly 19, Contig19-10163 (21886, 20885) CDS, reverse complemented, tr... gi\|68468747, gi\|... - gi\|68468747\|ref\|XP_721432.1\| hypothetical protein CaO19.2933 [Candida albicans SC5314], gi\|46443351\|...	209.0	[0..3]	[208..119]
gi\|40743803, gi\|... - gi\|67525983\|ref\|XP_661053.1\| hypothetical protein AN3449.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	206.0	[0..5]	[207..126]
gi\|109018563 - gi\|109018563\|ref\|XP_001083461.1\| PREDICTED: similar to HIV-induced protein-7-like protease [Macaca m...	204.0	[0..5]	[207..149]
gi\|114572284 - gi\|114572284\|ref\|XP_525042.2\| PREDICTED: YOD1 OTU deubiquinating enzyme 1 homolog isoform 2 [Pan tro...	204.0	[0..5]	[207..149]
YOD1 - YOD1 OTU deubiquinating enzyme 1 homolog (S. cerevisiae)	204.0	[0..5]	[207..149]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGIIVRRVI PSDNSCLFNA IGYVMDKDKN KAPELRQVIA AAVASNKEKY NEAFLGKLNE  60
   61 EYCAWILNPD KWGGAIELSI LADYYGREIA AYDIQTSRCD LYGQTRNYDE RVMLIYDGLH 120
  121 YDALALSP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	15.0
Match:	1tffA
Description:	Structure of Otubain-2
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [129-208]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FEGAEEDFDM TIYPVGKDRS IGSIEGLALN LVKDQQRKRS YTDTANFTLR CGVCQIGVIG  60
   61 QKEAVEHAQA TGHVNFQEYK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.21
Match:	1zr9A
Description:	Solution Structure of a Human C2H2-type Zinc Finger Protein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits