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View Structure Prediction Details

Protein: LSH6_ARATH
Organism: Arabidopsis thaliana
Length: 196 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LSH6_ARATH.

Description E-value Query
Range
Subject
Range
LSH5_ARATH - Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 5 OS=Arabidopsis thaliana GN=LSH5 PE=1 SV=1
283.0 [0..15] [181..3]

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Predicted Domain #1
Region A:
Residues: [1-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESADSGRSD PVKGDDPGPS FVSSPPATPS RYESQKRRDW NTFLQYLKNH KPPLALSRCS  60
   61 GAHVIEFLKY LDQFGKTKVH VAACPYFGHQ QPPSPCSCPL KQAWGSLDAL IGRLRAAYEE 120
  121 NGGRPDSNPF AARAVRIYLR EVRESQAKAR GIPYEKKKRK RPPTVTTVRV DVASSRQSDG 180
  181 DPCNVGAPSV AEAVPP

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 90.568636
Match: PF04852.3
Description: No description for PF04852.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle