YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21537141, gi\|...
Organism:	Arabidopsis thaliana
Length:	317 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21537141, gi|....

Description	E-value	Query Range	Subject Range
gi\|125574398, gi... - gi\|37532870\|ref\|NP_920737.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|31431209\|g...	282.0	[0..3]	[310..4]
gi\|116060982 - gi\|116060982\|emb\|CAL56370.1\| unnamed protein product [Ostreococcus tauri]	234.0	[0..53]	[316..3]
gi\|92898737 - gi\|92898737\|gb\|ABE94310.1\| Protein of unknown function DUF179 [Medicago truncatula]	226.0	[0..59]	[312..75]
gi\|91978807, gi\|... - gi\|91978807\|ref\|YP_571466.1\| hypothetical protein RPD_4348 [Rhodopseudomonas palustris BisB5], gi\|91...	224.0	[0..99]	[316..17]
gi\|113868871, gi... - gi\|113868871\|ref\|YP_727360.1\| hypothetical protein H16_A2916 [Ralstonia eutropha H16], gi\|113527647\|...	223.0	[0..129]	[316..10]
Y467_VIBCH - UPF0301 protein VC_0467 OS=Vibrio cholerae GN=VC_0467 PE=1 SV=2 Y467_VIBCH - UPF0301 protein VC_0467 OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=... gi\|116189559, gi... - gi\|75829092\|ref\|ZP_00758409.1\| COG1678: Putative transcriptional regulator [Vibrio cholerae MO10], g...	223.0	[0..130]	[316..1]
gi\|68554123, gi\|... - gi\|94311675\|ref\|YP_584885.1\| hypothetical protein Rmet_2743 [Ralstonia metallidurans CH34], gi\|93355...	222.0	[0..129]	[316..10]
gi\|75825868 - gi\|75825868\|ref\|ZP_00755303.1\| COG1678: Putative transcriptional regulator [Vibrio cholerae O395] gi\|116216658, gi... - gi\|75823369\|ref\|ZP_00752875.1\| COG1678: Putative transcriptional regulator [Vibrio cholerae RC385], ... gi\|75815271 - gi\|75815271\|ref\|ZP_00745789.1\| COG1678: Putative transcriptional regulator [Vibrio cholerae V52]	222.0	[0..130]	[316..1]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDACFLTSRS ISGVKELVPF IKARIFTCPK RNSGQFVTRK VASPISVNCS LSDSWKPLED  60
   61 DADLFKDCVN NSTSDADWRE FRARLVAGEQ AATSEKDQPS WSNPDMVVDY QPSSSSLITI 120
  121 GSKWAHKIH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [130-317]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPETGCLLIA TEKLDGVHIF EKTVILLLSV GPSGPIGVIL NRPSLMSIKE TKSTILDMAG  60
   61 TFSDKRLFFG GPLEEGLFLV SPRSGGDNEV GKSGVFRQVM KGLYYGTRES VGLAAEMVKR 120
  121 NLVGRSELRF FDGYCGWEKE QLKAEILGGY WTVAACSSTV VELGSAVQSH GLWDEVLGLI 180
  181 GPQTGSVI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	58.0
Match:	2hafA
Description:	No description for 2hafA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits