YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: RGXT3_ARATH
Organism: Arabidopsis thaliana
Length: 383 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RGXT3_ARATH.

Description E-value Query
Range
Subject
Range
MGP4_ARATH - UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase MGP4 OS=Arabidopsis thaliana GN=MGP4 PE=2 SV=1
338.0 [0..35] [351..54]

Back

Predicted Domain #1
Region A:
Residues: [1-383]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQQSQRPIS NRHISLLNRN GLILLLLLAL FVILGVFLPL TKSSLFMFPN TTSSSLSPSS  60
   61 SLSVSDWRDY SLAQAVKFVA KNETVIVCAV SYPFLPFLNN WLISISRQKH QEKVLVIAED 120
  121 YATLYKVNEK WPGHAVLIPP ALDPQSAHKF GSQGFFNLTS RRPQHLLNIL ELGYNVMYND 180
  181 VDMVWLQDPF DYLQGSYDAY FMDDMIAIKP LNHSHDLPPL SRSGVTYVCS CMIFLRSTDG 240
  241 GKLLMKTWVE EIQAQPWNNT QAKKPHDQPA FNRALHKTAN QVKVYLLPQS AFPSGGLYFR 300
  301 NETWVNETRG KHVIVHNNYI IGYDKKMKRF QDFSLWLVDD HALESPLGKL EIYQEQNTTT 360
  361 EGKNLTKIVR KQRKNRGKKH KLP

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.15
Match: 1zcuA
Description: apo form of the 162S mutant of glycogenin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.2097350467072 bayes_pls_golite062009
transferase activity 0.75347715535193 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle