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View Structure Prediction Details

Protein: gi|26451478, gi|...
Organism: Arabidopsis thaliana
Length: 358 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|26451478, gi|....

Description E-value Query
Range
Subject
Range
gi|52785363, gi|... - gi|52785363|ref|YP_091192.1| PtsI [Bacillus licheniformis ATCC 14580], gi|52347865|gb|AAU40499.1| Pt...
222.0 [0..1] [348..193]

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Predicted Domain #1
Region A:
Residues: [1-72]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATASIFPAA VTVTRDVTSL LNPSSLIIGK SLSPSKFSSI KSSVSFSRKT LTPIRYSSSP  60
   61 ADHSPATAVE AI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 6.39794
Match: 1zymA
Description: Enzyme I of the PEP:sugar phosphotransferase system HPr-binding (sub)domain; N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [73-358]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TNRSKTSLKS RLRGGETLYG LFLLSFSPTL AEIAAHAGYD YVVVDMEHGP GGIPEALDCI  60
   61 RALNAAGTSA ILRLPENSPT WAKKALDLGP QGIMFPMIES RKDATKAVSY CRFPPDGIRG 120
  121 SAHTVVRASN YGIDEGYLSN YAEEILIMCQ VESGEGVKKA DEIAAVDGVD CVQMGPLDLS 180
  181 ASLGYLWDPG HKKVREMMKK AEKSVLTTDP AKGGAYLSGF AMPHDGAGEI RGRGYHMVAG 240
  241 AVDVGLFRNA AVEDVRRFKM GLVNESDSED SSEHDKDVDD EKYWSE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.30103
Match: 2v5jA
Description: No description for 2v5jA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle