YRC Public Data Repository - Protein Structure Prediction

Protein:	NDBAA_ARATH
Organism:	Arabidopsis thaliana
Length:	107 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDBAA_ARATH.

Description	E-value	Query Range	Subject Range
NDBAB_ARATH - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 10-B OS=Arabidopsis thaliana GN=At3g18410 ...	190.0	[0..1]	[104..1]
gi\|18266636, gi\|... - gi\|37537116\|ref\|NP_922860.1\| unknown protein [Oryza sativa (japonica cultivar-group)], gi\|31433663\|g... gi\|125533060 - gi\|125533060\|gb\|EAY79625.1\| hypothetical protein OsI_34770 [Oryza sativa Indica Group]	168.0	[0..4]	[101..3]
gi\|39950993, gi\|... - gi\|39950993\|ref\|XP_363341.1\| hypothetical protein MGG_01267 [Magnaporthe grisea 70-15], gb\|EAA55616....	105.0	[0..16]	[82..21]
NDUS6_NEUCR - NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial OS=Neurospora crassa (strain ATCC 24698... NDUS6_NEUCR, NUM... - (Q03015) NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6...	105.0	[0..16]	[79..21]
NUMM_NEUCR - (Q03015) NADH-ubiquinone oxidoreductase 12 kDa subunit, mitochondrial precursor (EC 1.6.5.3) (EC 1.6...	104.0	[0..16]	[79..21]
gi\|116180416, gi... - gi\|88185133\|gb\|EAQ92601.1\| hypothetical protein CHGG_00836 [Chaetomium globosum CBS 148.51], gi\|1161...	102.0	[0..16]	[79..22]
gi\|40742951, gi\|... - gi\|67901148\|ref\|XP_680830.1\| hypothetical protein AN7561.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	102.0	[0..16]	[79..21]
gi\|169602757, gi... - gi\|169602757\|ref\|XP_001794800.1\| hypothetical protein SNOG_04381 [Phaeosphaeria nodorum SN15], gi\|11...	101.0	[0..3]	[79..13]
gi\|46108232, gi\|... - gi\|46108232\|ref\|XP_381174.1\| hypothetical protein FG00998.1 [Gibberella zeae PH-1], gi\|42544453\|gb\|E...	101.0	[0..16]	[79..21]

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Predicted Domain #1

Region A:
Residues: [1-107]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRKKGLPEF EESAPDGFDP ENPYKDPVAM VEMREHIVRE KWIHIEKAKI LREKVKWCYR  60
   61 VEGVNHYQKC RHLVQQYLDA TRGVGWGKDH RPISLHGPKP VAVEEAE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits