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View Structure Prediction Details

Protein: MA651_ARATH
Organism: Arabidopsis thaliana
Length: 587 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MA651_ARATH.

Description E-value Query
Range		 Subject
Range
gi|68388302 - gi|68388302|ref|XP_696268.1| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]
 238.0 [0..3] [549..2346]
MYH4_PIG - Myosin-4 OS=Sus scrofa GN=MYH4 PE=2 SV=1
 214.0 [0..3] [549..1350]
MYH4_RAT - Myosin-4 OS=Rattus norvegicus GN=Myh4 PE=1 SV=1
 214.0 [0..3] [549..1352]
MYH4_MOUSE - Myosin-4 OS=Mus musculus GN=Myh4 PE=2 SV=1
 214.0 [0..3] [549..1352]
MYH4_CANLF - Myosin-4 OS=Canis lupus familiaris GN=MYH4 PE=3 SV=1
 214.0 [0..3] [549..1352]
MYH1 - myosin, heavy chain 1, skeletal muscle, adult
h0010399 - null
 213.0 [0..3] [549..1352]
gi|50757621 - gi|50757621|ref|XP_415581.1| PREDICTED: similar to fast myosin heavy chain isoform 3 [Gallus gallus]
 213.0 [0..3] [549..1453]

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Predicted Domain #1
Region A:
Residues: [1-95] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVTDTESPH LGEITCGTLL EKLQEIWDEV GESDDERDKL LLQIEQECLD VYKRKVEQAA  60
   61 KSRAELLQTL SDANAELSSL TMSLGDKSLV GIPDK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

    MCM
Score		 SCOP
Match		 SCOP Description
View Download 0.931 a.8.11 Description not found.

Predicted Domain #2
Region A:
Residues: [96-410] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSGTIKEQLA AIAPALEQLW QQKEERVREF SDVQSQIQKI CGDIAGGLSN EVPIVDESDL  60
   61 SLKKLDDFQS QLQELQKEKS DRLRKVLEFV STVHDLCAVL GLDFLSTVTE VHPSLDEDTS 120
  121 VQSKSISNET LSRLAKTVLT LKDDKKQRLQ KLQELATQLI DLWNLMDTPD EERELFDHVT 180
  181 CNISSSVDEV TVPGALARDL IEQAEVEVDR LDQLKASRMK EIAFKKQSEL EEIYARAHVE 240
  241 VNPESARERI MSLIDSGNVE PTELLADMDS QISKAKEEAF SRKDILDRVE KWMSACEEES 300
  301 WLEDYNRDQN RYSAS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.0
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [411-587] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGAHLNLKRA EKARILVSKI PAMVDTLVAK TRAWEEEHSM SFAYDGVPLL AMLDEYGMLR  60
   61 QEREEEKRRL REQKKVQEQP HVEQESAFST RPSPARPVSA KKTVGPRANN GGANGTHNRR 120
  121 LSLNANQNGS RSTAKEAGRR ETLNRPAAPT NYVAISKEEA ASSPVSGAAD HQVPASP

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.0
Match: 2dfsA
Description: No description for 2dfsA was found.
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle