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View Structure Prediction Details

Protein: gi|110743600, gi...
Organism: Arabidopsis thaliana
Length: 505 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110743600, gi....

Description E-value Query
Range
Subject
Range
gi|89949322, gi|... - gi|90019722|ref|YP_525549.1| DNA polymerase I [Saccharophagus degradans 2-40], gi|89949322|gb|ABD793...
360.0 [0..3] [488..322]

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Predicted Domain #1
Region A:
Residues: [1-505]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METNLKIYLV SSTDSSEFTH LKWSFTRSTI IALDAEWKPQ HSNTSSFPTV TLLQVACRLS  60
   61 HATDVSDVFL IDLSSIHLPS VWELLNDMFV SPDVLKLGFR FKQDLVYLSS TFTQHGCEGG 120
  121 FQEVKQYLDI TSIYNYLQHK RFGRKAPKDI KSLAAICKEM LDISLSKELQ CSDWSYRPLT 180
  181 EEQKLYAATD AHCLLQIFDV FEAHLVEGIT VQDLRVINVG LQEILTESDY SSKIVTVKLC 240
  241 KATDVIRSMS ENGQNIANGV VPRKTTLNTM PMDENLLKIV RKFGERILLK ESDLLPKKLK 300
  301 KKTRRRVASS TMNTNKQLVC SADWQGPPPW DSSLGGDGCP KFLLDVMVEG LAKHLRCVGI 360
  361 DAAIPHSKKP DSRELLDQAF KENRVLLTRD TKLLRHQDLA KHQIYRVKSL LKNEQLLEVI 420
  421 ETFQLKISGN QLMSRCTKCN GKFIQKPLSI EEAIEAAKGF QRIPNCLFNK NLEFWQCMNC 480
  481 HQLYWEGTQY HNAVQKFMEV CKLSE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 92.39794
Match: 1dpiA
Description: STRUCTURE OF LARGE FRAGMENT OF ESCHERICHIA COLI DNA POLYMERASE I COMPLEXED WITH D/TMP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.722279828632226 bayes_pls_golite062009
hydrolase activity 0.29272620969648 bayes_pls_golite062009
hydrolase activity, acting on ester bonds 0.24934115119652 bayes_pls_golite062009
nuclease activity 0.239989310123501 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle