YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|25054947, gi\|...
Organism:	Arabidopsis thaliana
Length:	261 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25054947, gi|....

Description	E-value	Query Range	Subject Range
gi\|22655440, gi\|... - gi\|89213233\|gb\|ABD64056.1\| At5g24650 [Arabidopsis thaliana], gi\|22655440\|gb\|AAM98312.1\| At5g24650/K1...	288.0	[0..3]	[260..1]
gi\|113564279, gi... - gi\|115458216\|ref\|NP_001052708.1\| Os04g0405100 [Oryza sativa (japonica cultivar-group)], gi\|113564279...	223.0	[0..7]	[252..3]
gi\|116309456 - gi\|116309456\|emb\|CAH66528.1\| H0502B11.8 [Oryza sativa (indica cultivar-group)]	221.0	[0..7]	[256..3]
gi\|68491954, gi\|... - gi\|68491971\|ref\|XP_710236.1\| hypothetical protein CaO19.1352 [Candida albicans SC5314], gi\|68491954\|... orf19.8932, orf1... - orf19.1352 CGDID:CAL0003855 Assembly 19, Contig19-10111 (7528, 6974) CDS, reverse complemented, tran... gi\|238883710 - gi\|238883710\|gb\|EEQ47348.1\| mitochondrial import inner membrane translocase subunit TIM22 [Candida a...	171.0	[0..29]	[195..14]
gi\|109130740 - gi\|109130740\|ref\|XP_001104863.1\| PREDICTED: similar to Mitochondrial import inner membrane transloca...	170.0	[0..51]	[203..55]
gi\|57111755 - gi\|57111755\|ref\|XP_538028.1\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	170.0	[0..51]	[203..5]
gi\|34933423, gi\|... - gi\|34933423\|ref\|XP_228758.2\| PREDICTED: similar to Mitochondrial import inner membrane translocase s...	170.0	[0..51]	[203..5]
TI17B_MOUSE - Mitochondrial import inner membrane translocase subunit Tim17-B OS=Mus musculus GN=Timm17b PE=1 SV=1	169.0	[0..51]	[203..5]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVVGGGGEGD QKRSSGEMMA MASLFNDQQN PIQQFQVKFK EVETNFKTWL SKQSIPVEAA  60
   61 VVSTMSGVQG AFIGGLMGTL SPEMPQAG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.958	a.7.16	Description not found.
View	Download	0.910	a.7.14	Description not found.
View	Download	0.904	a.24.9	alpha-catenin/vinculin
View	Download	0.864	a.7.6	Ribosomal protein S20
View	Download	0.856	a.46.1	Methionine synthase domain
View	Download	0.820	a.7.14	Description not found.
View	Download	0.804	f.17.1	F1F0 ATP synthase subunit C
View	Download	0.774	a.60.8	HRDC-like
View	Download	0.645	a.4.9	Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3

Predicted Domain #2

Region A:
Residues: [89-261]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDPQAIASMK QAQALVGGPW VQARNFAAIT GVNAGIASVM KRIRGKEDIE SAVVAALGSG  60
   61 FAYSLVSQGL QGQPMNAITT AAGFAVFQGV FFKLGERFSK PSTEDPFFTR GRTMLVKLGL 120
  121 EKYEKNFKKG LLTDPTLPLL TDSALKDANI PPGPRLMILD HIQRDPEIKG KRK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.06
Match:	2b6gA
Description:	RNA recognition by the Vts1 SAM domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits