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View Structure Prediction Details

Protein: PUP4_ARATH
Organism: Arabidopsis thaliana
Length: 382 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PUP4_ARATH.

Description E-value Query
Range
Subject
Range
gi|83767208 - gi|83767208|dbj|BAE57347.1| unnamed protein product [Aspergillus oryzae]
gi|169769759 - gi|169769759|ref|XP_001819349.1| hypothetical protein [Aspergillus oryzae RIB40]
142.0 [0..7] [369..161]

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Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDGRVNADP QQEENMVKPP VKRSLTLLIV TYFFLFFGSI ASSLLAKYYF VYGGSSRWVS  60
   61 TWVQSAGFPL LLILIYFPHY V

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [82-212]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LKTTTRRPFT RFTLRHLIFS VLIGLVLGFN NFLFSWGTSY LPVSTSSLLL STQLVFTLIL  60
   61 SRIIVKQKIT FSNLNCVVLL TLSSVLLALD SSKDKPSGLT KTKYFIGYVS TIGAGLLFAL 120
  121 YLPVTEKLYR T

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.23
Match: 2i68A
Description: No description for 2i68A was found.

Predicted Domain #3
Region A:
Residues: [213-382]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VYCYAMVMEV QLVMEFAATV FATIGMACEG GFKEMVKEAN HVFTKGPTFY WTFAILANVV  60
   61 TWQLSFAATS GMVYLTSGIT GGICMTALLA MNVIGGVVAY GDVFGGVKIV STVLCIWGFS 120
  121 SYTYGMYMKM KKEEKEKGEY SGVKTTEDSG EMEVEMGNVK DDVAAADDRA 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle