YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PROT3_ARATH
Organism: Arabidopsis thaliana
Length: 436 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PROT3_ARATH.

Description E-value Query
Range
Subject
Range
gi|91084137 - gi|91084137|ref|XP_969912.1| PREDICTED: similar to CG8475-PA, isoform A [Tribolium castaneum]
211.0 [0..4] [388..2456]

Back

Predicted Domain #1
Region A:
Residues: [1-436]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSKNRINNV GEGVDIEIPD TAHQISSDSW FQAAFVLTTS INSAYVLGYS GTVMVPLGWI  60
   61 GGVVGLILAT AISLYANTLV AKLHEFGGKR HIRYRDLAGF IYGRKAYCLT WVLQYVNLFM 120
  121 INCGFIILAG SALKAVYVLF RDDHAMKLPH FIAIAGLICA VFAIGIPHLS ALGIWLAVST 180
  181 ILSLIYIVVA IVLSVKDGVK APSRDYEIQG SPLSKLFTIT GAAATLVFVF NTGMLPEIQA 240
  241 TVKQPVVKNM MKALYFQFTV GVLPMFAVVF IGYWAYGSST SPYLLNNVNG PLWVKALANI 300
  301 SAILQSVISL HIFASPTYEY MDTKFGIKGN PLALKNLLFR IMARGGYIAV STLLSALLPF 360
  361 LGDFMSLTGA VSTFPLTFIL ANHMYYKAKN NKLNTLQKLC HWLNVVFFSL MSVAAAIAAL 420
  421 RLIALDSKNF HVFADL

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.3
Match: 2a65A
Description: Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle