YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|18406532, gi\|...
Organism:	Arabidopsis thaliana
Length:	347 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18406532, gi|....

Description	E-value	Query Range	Subject Range
gi\|21554202 - gi\|21554202\|gb\|AAM63281.1\| unknown [Arabidopsis thaliana]	535.0	[0..1]	[347..1]
gi\|73959059 - gi\|73959059\|ref\|XP_851838.1\| PREDICTED: similar to N-terminal Asn amidase [Canis familiaris]	465.0	[0..43]	[346..153]
gi\|76652971 - gi\|76652971\|ref\|XP_869978.1\| PREDICTED: similar to N-terminal Asn amidase isoform 2 [Bos taurus]	463.0	[0..45]	[346..24]
gi\|68341965, gi\|... - gi\|68341965\|ref\|NP_001020295.1\| N-terminal asparagine amidase [Rattus norvegicus], gi\|60688176\|gb\|AA...	462.0	[0..45]	[346..24]
gi\|1082956 - pir\|\|A55768 asparaginyl-peptide amidohydrolase (EC 3.5.1.-) - pig NTAN1_PIG - Protein N-terminal asparagine amidohydrolase OS=Sus scrofa GN=NTAN1 PE=1 SV=3 gi\|55741471 - ref\|NP_999207.1\| protein N-terminal asparagine amidohydrolase [Sus scrofa]	461.0	[0..45]	[346..24]
gi\|114661142 - gi\|114661142\|ref\|XP_510838.2\| PREDICTED: N-terminal Asn amidase [Pan troglodytes]	461.0	[0..45]	[346..24]
NTAN1 - N-terminal asparagine amidase	456.0	[0..45]	[346..24]
NTAN1_MOUSE - Protein N-terminal asparagine amidohydrolase OS=Mus musculus GN=Ntan1 PE=1 SV=3	456.0	[0..45]	[346..24]
gi\|50755403 - gi\|50755403\|ref\|XP_414729.1\| PREDICTED: similar to RRN3 [Gallus gallus]	445.0	[0..45]	[345..730]

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Predicted Domain #1

Region A:
Residues: [1-117]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYVGGVQFL DESSSFSLSS SSQGSSLLVD VMSHPVITLA SDSFKNLEEK NVSFDESDSE  60
   61 SSTKDRYVYI FQREFAVVNP ALVDFVGTDE ATTCVGLVIR NRKSGMTSVA HMDSPEI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.583	d.129.3	Bet v1-like
View	Download	0.558	a.79.1	Antitermination factor NusB
View	Download	0.475	a.219.1	Description not found.
View	Download	0.472	d.38.1	Thioesterase/thiol ester dehydrase-isomerase
View	Download	0.463	a.79.1	Antitermination factor NusB
View	Download	0.463	a.79.1	Antitermination factor NusB
View	Download	0.419	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.383	b.115.1	Fucose-binding lectin II (PA-IIL)
View	Download	0.361	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore

Predicted Domain #2

Region A:
Residues: [118-250]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VDLGISQMLL LVLQDDVDAE LDVHMVGGYE DVDIKNADGV GDYAKPEGYS FPLCCKLVET  60
   61 LQKRRENFHI QTLFILGHNT KLDSQANTCP IFNGCLVNTS TGAILPASFN RTSRCPDEIV 120
  121 RRIRVSSSFE DSS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.609	N/A	N/A	c.45.1	(Phosphotyrosine protein) phosphatases II
View	Download	0.547	N/A	N/A	c.58.1	Aminoacid dehydrogenase-like, N-terminal domain
View	Download	0.547	N/A	N/A	c.58.1	Aminoacid dehydrogenase-like, N-terminal domain
View	Download	0.434	N/A	N/A	c.58.1	Aminoacid dehydrogenase-like, N-terminal domain
View	Download	0.434	N/A	N/A	c.58.1	Aminoacid dehydrogenase-like, N-terminal domain
View	Download	0.432	N/A	N/A	a.74.1	Cyclin-like
View	Download	0.400	N/A	N/A	c.23.6	Cobalamin (vitamin B12)-binding domain
View	Download	0.398	N/A	N/A	c.23.6	Cobalamin (vitamin B12)-binding domain
View	Download	0.371	N/A	N/A	d.108.1	Acyl-CoA N-acyltransferases (Nat)
View	Download	0.363	N/A	N/A	c.26.2	Adenine nucleotide alpha hydrolases-like

Predicted Domain #3

Region A:
Residues: [251-347]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WKGKLLDTYD TKTDRFIIAP CRWTMRLIEY VWELNQLTDE EILTNCSTSP SAEGPDFVNS  60
   61 LRRNWGYLLK YPEWSKTFPR RQPRVFERTV DGHWKKC

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.725	N/A	N/A	d.354.1	Description not found.
View	Download	0.641	N/A	N/A	a.64.1	Saposin
View	Download	0.641	N/A	N/A	a.64.1	Saposin
View	Download	0.632	N/A	N/A	a.4.1	Homeodomain-like
View	Download	0.593	N/A	N/A	a.60.9	lambda integrase-like, N-terminal domain
View	Download	0.592	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.592	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.524	N/A	N/A	a.76.1	Iron-dependent represor protein, dimerization domain
View	Download	0.519	N/A	N/A	a.4.1	Homeodomain-like

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits