| Protein: | gi|17063173, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 460 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|17063173, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
262.0 | [0..1] | [438..1] |
|
Region A: Residues: [1-136] |
1 11 21 31 41 51
| | | | | |
1 MAQQEASPSP GAEVVGRAFV EQYYHILHQS PGLVHRFYQD SSFLTRPDVT GAVTTVTTMQ 60
61 AINDKILSLK YEDYTAEIET ADAQESHERG VIVLVTGRLT GNDNVRKKFS QSFFLAPQDK 120
121 GYFVLNDVFR FLEEKE
|
| Detection Method: |  |
| Confidence: | 39.09691 |
| Match: | 1a2kA |
| Description: | Nuclear transport factor-2 (NTF2) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| protein binding | 1.02236648440434 | bayes_pls_golite062009 |
| binding | 0.734272307307889 | bayes_pls_golite062009 |
| protein transporter activity | 0.48055198672045 | bayes_pls_golite062009 |
| transporter activity | 0.258106613266757 | bayes_pls_golite062009 |
|
Region A: Residues: [137-385] |
1 11 21 31 41 51
| | | | | |
1 VTAQARSVPI NGTTRDVQAP IEPERVVVSH EPEVEPEPVA SIEEEDLDNV AEVYDPSDKD 60
61 EGVVVDVEPI EPPTQISHNE ILSVPQGDAP KHSYASILKQ MKSSPAPTTH VARNKPRPAP 120
121 VNQKLTAPPA EPAARPEASA HENVPNSSHV DVEDDGHSIY VRNLPFDSTP TQLEEVFKNF 180
181 GAIKHEGIQV RSNKQQGFCF GFVEFETSSG KQSALEASPV TIGDRQAVVE EKKTNSRGGG 240
241 NNGGSRGRY
|
| Detection Method: | |
| Confidence: | 46.522879 |
| Match: | 1pgzA |
| Description: | Crystal Structure of UP1 Complexed With d(TTAGGGTTAG(6-MI)G); A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6-MI) |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| RNA binding | 2.10830442385058 | bayes_pls_golite062009 |
| binding | 1.8541691379227 | bayes_pls_golite062009 |
| protein binding | 0.802085345859498 | bayes_pls_golite062009 |
| nucleic acid binding | 0.727288287394927 | bayes_pls_golite062009 |
| mRNA binding | 0.0988424523768603 | bayes_pls_golite062009 |
|
Region A: Residues: [386-460] |
1 11 21 31 41 51
| | | | | |
1 FSGRGSFRNE SFKGGRGGGG RGGYGRGGGE FSGRPKSSNP RNGGEGYQRV PQNGGGGRGG 60
61 RGEGGRGGAR GGGSS
|
| Detection Method: | |
| Confidence: | 1.17 |
| Match: | 1jchA |
| Description: | Ribonuclease domain of colicin E3; Colicin E3 translocation domain; Colicin E3 receptor domain |
Matching Structure (courtesy of the PDB): |
|
