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View Structure Prediction Details

Protein: PDCB1_ARATH
Organism: Arabidopsis thaliana
Length: 201 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDCB1_ARATH.

Description E-value Query
Range
Subject
Range
PDCB3_ARATH - PLASMODESMATA CALLOSE-BINDING PROTEIN 3 OS=Arabidopsis thaliana GN=PDCB3 PE=1 SV=1
179.0 [0..1] [196..1]

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Predicted Domain #1
Region A:
Residues: [1-117]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALVLSLLL LSLAGHSSAS WCVCKTGLSD TVLQATLDYA CGNGADCNPT KPKQSCFNPD  60
   61 NVRSHCNYAV NSFFQKKGQS PGSCNFDGTA TPTNSDPSYT GCAFPTSASG SSGSTTV

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 39.366532
Match: PF07983.4
Description: No description for PF07983.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [118-201]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPGTTNPKGS PTTTTLPGSG TNSPYSGNPT NGVFGGNSTG GTTGTGINPD YTTDSSAFAL  60
   61 KNSSKLFICL LLIASSGFCS FLML

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle