YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ASB1_ARATH
Organism: Arabidopsis thaliana
Length: 276 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ASB1_ARATH.

Description E-value Query
Range
Subject
Range
gi|34398183 - gi|34398183|gb|AAQ67181.1| CAD [Iteaphila sp. NCSU-99072186]
235.0 [0..3] [275..39]

Back

Predicted Domain #1
Region A:
Residues: [1-71]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASTLYKSC LLQPKSGSTT RRLNPSLVNP LTNPTRVSVL GKSRRDVFAK ASIEMAESNS  60
   61 IPSVVVNSSK Q

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.662 N/A N/A g.18.1 Complement control module/SCR domain
View Download 0.467 N/A N/A d.17.1 Cystatin/monellin
View Download 0.433 N/A N/A b.34.5 Translation proteins SH3-like domain
View Download 0.415 N/A N/A d.200.1 Integrin beta tail domain
View Download 0.409 N/A N/A d.53.1 Ribosomal protein S3 C-terminal domain

Predicted Domain #2
Region A:
Residues: [72-276]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HGPIIVIDNY DSFTYNLCQY MGELGCHFEV YRNDELTVEE LKKKNPRGVL ISPGPGTPQD  60
   61 SGISLQTVLE LGPLVPLFGV CMGLQCIGEA FGGKIVRSPF GVMHGKSSMV HYDEKGEEGL 120
  121 FSGLSNPFIV GRYHSLVIEK DTFPSDELEV TAWTEDGLVM AARHRKYKHI QGVQFHPESI 180
  181 ITTEGKTIVR NFIKIVEKKE SEKLT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 35.045757
Match: 1qdlB
Description: Anthranilate synthase GAT subunit, TrpG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
4-amino-4-deoxychorismate synthase activity 4.48164623771604 bayes_pls_golite062009
anthranilate synthase activity 2.51214170411838 bayes_pls_golite062009
ligase activity 1.77692713123297 bayes_pls_golite062009
oxo-acid-lyase activity 1.35896725827905 bayes_pls_golite062009
catalytic activity 1.30391542469987 bayes_pls_golite062009
ligase activity, forming carbon-nitrogen bonds 0.628648036096965 bayes_pls_golite062009
imidazoleglycerol-phosphate synthase activity 0.270391651600004 bayes_pls_golite062009
carbon-carbon lyase activity 0.0769356405014503 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle