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View Structure Prediction Details

Protein: TIF6B_ARATH
Organism: Arabidopsis thaliana
Length: 352 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TIF6B_ARATH.

Description E-value Query
Range
Subject
Range
gi|21618251 - gi|21618251|gb|AAM67301.1| unknown [Arabidopsis thaliana]
362.0 [0..1] [352..1]

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Predicted Domain #1
Region A:
Residues: [1-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERDFLGLGS KNSPITVKEE TSESSRDSAP NRGMNWSFSN KVSASSSQFL SFRPTQEDRH  60
   61 RKSGNYHLPH SGSFMPSSVA DVYDSTRKAP YSSVQGVRMF PNSNQHEETN AVSMSMPGFQ 120
  121 SHHYAPGGRS FMNNNNNSQP 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [141-266]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LVGVPIMAPP ISILPPPGSI VGTTDIRSSS KPIGSPAQLT IFYAGSVCVY DDISPEKAKA  60
   61 IMLLAGNGSS MPQVFSPPQT HQQVVHHTRA SVDSSAMPPS FMPTISYLSP EAGSSTNGLG 120
  121 ATKATR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [267-352]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLTSTYHNNQ ANGSNINCPV PVSCSTNVMA PTVALPLARK ASLARFLEKR KERVTSVSPY  60
   61 CLDKKSSTDC RRSMSECISS SLSSAT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle