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View Structure Prediction Details

Protein: gi|25402660, gi|...
Organism: Arabidopsis thaliana
Length: 204 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|25402660, gi|....

Description E-value Query
Range
Subject
Range
gi|21536679 - gi|21536679|gb|AAM61011.1| unknown [Arabidopsis thaliana]
166.0 [0..12] [204..1]

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Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSRSGEQGK RMAELSKNLK EGERILEPTR RPDGTLRKPI RIRPGYTPED EVVKYQSKGS  60
   61 LMKKEMASQG PPGYEPDPAP KPK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [84-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TKAAKRNERK KEKRLQATAE KANSSEDGSA SNGSQSVNVL ASEMEALDVS SNNDVCGGAP  60
   61 NPGTTGEDVE KRIRALKKKI RLTEAQQQKT ASRDLNPEQL EKFSKLEEWR QELKALEDKA 120
  121 A

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.712 N/A N/A a.7.3 Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain
View Download 0.633 N/A N/A a.47.2 t-snare proteins
View Download 0.420 N/A N/A d.6.1 Prion-like
View Download 0.393 N/A N/A a.23.1 HSC20 (HSCB), C-terminal oligomerisation domain
View Download 0.376 N/A N/A a.29.2 Bromodomain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle