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View Structure Prediction Details

Protein: DTX56_ARATH
Organism: Arabidopsis thaliana
Length: 491 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DTX56_ARATH.

Description E-value Query
Range
Subject
Range
gi|113548993, gi... - gi|115453843|ref|NP_001050522.1| Os03g0571900 [Oryza sativa (japonica cultivar-group)], gi|113548993...
314.0 [0..21] [479..636]

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Predicted Domain #1
Region A:
Residues: [1-240]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSETSKSESL DPEVSEGLCS KTLMQSIVHE LKLQMRIGLP LVVMNLLWFG KMTTTSVFLG  60
   61 RQGELNLAGG SLGFSFANVT GFSVLYGISA AMEPICGQAF GAKNFKLLHK TLFMAVLLLL 120
  121 LISVPISFLW LNVHKILTGF GQREDISFIA KKYLLYLLPE LPILSFLCPL KAYLSSQGVT 180
  181 LPIMFTTAAA TSLHIPINIV LSKARGIEGV AMAVWITDFI VVILLTGYVI VVERMKENKW 240
  241 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 39.958607
Match: PF01554.9
Description: No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [241-491]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KQGGWLNQSA QDWLTLIKLS GPCCLTVCLE WWCYEILVLL TGRLPNPVQA VSILIIVFNF  60
   61 DYLLYAVMLS LGTCVATRVS NELGANNPKG AYRAAYTTLI VGIISGCIGA LVMIAFRGFW 120
  121 GSLYTHHDQL ILNGVKKMML IMAVIEVVNF PLMVCGEIVR GTAKPSLGMY ANLSGFYLLA 180
  181 LPLGATLAFK AKQGLQGFLI GLFVGISLCL SILLIFIARI DWEKEAGKAQ ILTCNTEDEQ 240
  241 TSQGSGQDSH S

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 43.721246
Match: PF01554.9
Description: No description for PF01554.9 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle