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View Structure Prediction Details

Protein: TPS26_ARATH
Organism: Arabidopsis thaliana
Length: 598 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TPS26_ARATH.

Description E-value Query
Range
Subject
Range
TPSGD_VITVI - (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1
708.0 [0..45] [598..11]

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Predicted Domain #1
Region A:
Residues: [1-598]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAKFGSQIS LHFRTNSFPL RKLYGFPLTT FSGTSLNHLR LKATNTLKGD DQESIRKFKK  60
   61 LPTSEWTHYF HSFVVDVSEM DALRNEIDAL KPKVKNTIMS SQGIDSTKKR ILMIYMLVSL 120
  121 GLAHHFEEEI YETLRDGFGK IEEMMEDEDD LCTVSIIFWA FRRYGHYISS DVFRRFKGSN 180
  181 GNFKESLTGY AKGMLSLYEA AHLGTTKDYI LQEALSFTSS HLESLAACGT CPPHLSVHIQ 240
  241 NVLSVPQHWN MEILVPVEYI PFYEQEKDHD EILLKFAKLS FKLLQLQYIQ DLKIVTKWYK 300
  301 ELEFASKLPP YFRDNIVVNY FYVLAVIYTP QHSYERIMLT QYFTCLAILD DTFDRYASLP 360
  361 EAISLANSLE RWAPNDAMDK QPDYLKIVLN FILKTFEVFQ KELEPEGRSY TVKATIEEFK 420
  421 TVTKGNFDLA KWAHAVHVPS FEEYMEVGEE EISVCSTLAG IFMCMEQKAT KEDYEWLKSR 480
  481 PKFIQTLCAR CRLKNDITGF EDDMSRGYVT NAVNCYMKQY GVTKQEAFGE LNKIIVEADK 540
  541 ILNEEFLTTV GVRHCVLKAT FDLARMIFIT YNGYEGFTYP QGKIKEYMTS LFVDRIGL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 5eauA
Description: 5-EPI-ARISTOLOCHENE SYNTHASE FROM NICOTIANA TABACUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.87397377711135 bayes_pls_golite062009
transferase activity 1.34929557841705 bayes_pls_golite062009
transferase activity, transferring alkyl or aryl (other than methyl) groups 1.22586398285056 bayes_pls_golite062009
prenyltransferase activity 0.302854173865421 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle