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View Structure Prediction Details

Protein: YSL7_ARATH
Organism: Arabidopsis thaliana
Length: 688 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YSL7_ARATH.

Description E-value Query
Range
Subject
Range
gi|86559337, gi|... - gi|86559337|gb|ABD04076.1| YSL transporter 1 [Thlaspi caerulescens], gi|82468791|gb|ABB76761.1| YSL ...
669.0 [0..1] [688..1]

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Predicted Domain #1
Region A:
Residues: [1-74]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVERSKKDD DLNNGSKSNE EEEISVERIF EESNEIPPPW QKQLTFRALI VSFILAILFT  60
   61 FVVMKLNLTT GIIP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [75-361]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SLNISAGLLG FFFVKSWTKI LNKAGFLKQP FTRQENTVIQ TCVVASSGIA FSGGFGSYLF  60
   61 GMSDVVAKQS AEANTPLNIK NPHLGWMIGF LFVVSFLGLF SVVPLRKIMI VDFKLTYPSG 120
  121 TATAHLINSF HTPQGAKLAK KQVRALGKFF SFSFLWGFFQ WFFATGDGCG FANFPTFGLK 180
  181 AYENKFYFDF SATYVGVGMI CPYLINVSLL IGAILSWGVM WPLIGAQKGK WYAADLSSTS 240
  241 LHGLQGYRVF IAIAMILGDG LYNFIKVLGR TVFGLYKQFK NKDVLPI

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [362-452]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NDHTSTAPVT ISYDDKRRTE LFLKDRIPSW FAVTGYVVLA IVSIITVPHI FHQLKWYHIL  60
   61 IMYIIAPVLA FCNAYGCGLT DWSLASTYGK L

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [453-530]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AIFTIGAWAG ASNGGVLAGL AACGVMMNIV STASDLMQDF KTGYMTLASP RSMFLSQAIG  60
   61 TAMGCVISPC VFWLFYKA

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [531-688]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FPDFGQPGTA YPAPYALVYR NMSILGVEGF SALPKHCLML CYIFFAAAVI VNGIRDALGP  60
   61 KWARFIPLPM AMAIPFYLGG YFTIDMCLGS LILFIWRKLN KPKADAYSSA VASGLICGEG 120
  121 IWTLPSSILA LAGVKAPICM KFLSMASNNK VDAFLNPS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle