YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PMP22_ARATH
Organism: Arabidopsis thaliana
Length: 190 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PMP22_ARATH.

Description E-value Query
Range
Subject
Range
gi|79325105, gi|... - gi|98961831|gb|ABF59245.1| unknown protein [Arabidopsis thaliana], gi|79325105|ref|NP_001031637.1| u...
191.0 [0..8] [187..6]

Back

Predicted Domain #1
Region A:
Residues: [1-122]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSPPKKTT LQRYLSQLQQ HPLRTKAITA GVLSGVSDVV SQKLSGIQKI QLRRVLLKVI  60
   61 FAGGFLGPAG HFFHTYLDKF FKGKKDTQTV AKKVILEQLT LSPLNHLLFM IYYGVVIERT 120
  121 PW

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [123-190]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLVRERIKKT YPTVQLTAWT FFPVVGWINY KYVPLHFRVI LHSLVAFFWG IFLTLRARSM  60
   61 TLALAKAK

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 4.508638
Match: PF04117.3
Description: No description for PF04117.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle