YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|238481283, gi...
Organism:	Arabidopsis thaliana
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|238481283, gi....

Description	E-value	Query Range	Subject Range
gi\|114671683 - gi\|114671683\|ref\|XP_511783.2\| PREDICTED: similar to nuclear protein p30 [Pan troglodytes] gi\|187951695, gi... - gi\|56118234\|ref\|NP_859067.2\| proline rich 6 [Homo sapiens], gi\|187951695\|gb\|AAI37487.1\| Centromere p...	141.0	[0..3]	[135..140]
gi\|73956090 - gi\|73956090\|ref\|XP_546642.2\| PREDICTED: similar to proline rich 6 [Canis familiaris]	139.0	[0..3]	[135..46]
gi\|157763756 - gi\|157763756\|ref\|XP_001674221.1\| Hypothetical protein CBG09341 [Caenorhabditis briggsae AF16] gi\|187031930, gi... - gi\|39593117\|emb\|CAE64586.1\| Hypothetical protein CBG09341 [Caenorhabditis briggsae], gi\|187031930\|em...	139.0	[0..1]	[131..1]
CENPV_MOUSE - Centromere protein V OS=Mus musculus GN=Cenpv PE=1 SV=2	138.0	[0..3]	[135..120]
gi\|109488271 - gi\|109488271\|ref\|XP_577104.2\| PREDICTED: similar to proline rich 6 [Rattus norvegicus]	137.0	[0..3]	[135..118]
CE30761 - status:Confirmed UniProt:Q8MNR9 protein_id:AAM29678.1	136.0	[0..1]	[131..1]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESELIFHEG GCHCGKIKWR VKAARSVIAW SCNCSDCSMR GNVHFIVPSS NFELLDDSKD  60
   61 FITTYTFGTH TAKHTFCKVC GITSFYIPRS NPDGVAVTVK CVKSGTLAHI EVKSYDGQNW 120
  121 EMSHKKTGIA SFSKE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	9.69897
Match:	1x6mA
Description:	Crystal structure of the glutathione-dependent formaldehyde-activating enzyme (Gfa)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits