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View Structure Prediction Details

Protein: KRP6_ARATH
Organism: Arabidopsis thaliana
Length: 196 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KRP6_ARATH.

Description E-value Query
Range
Subject
Range
gi|42362358 - gi|42362358|gb|AAS13374.1| cyclin-dependent kinase inhibitor 1;1 [Glycine max]
192.0 [0..5] [196..12]

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Predicted Domain #1
Region A:
Residues: [1-118]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSERKRELAE EASSTSFSPL KKTKLNDSSD SSPDSHDVIV FAVSSSSVAS SAALASDECS  60
   61 VTIGGEESDQ SSSISSGCFT SESKEIAKNS SSFGVDLEDH QIETETETST FITSNFRK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [119-196]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETSPVSEGLG ETTTEMESSS ATKRKQPGVR KTPTAAEIED LFSELESQDD KKKQFIEKYN  60
   61 FDIVNDEPLE GRYKWDRL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 17.167491
Match: PF02234.10
Description: No description for PF02234.10 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.442 N/A N/A a.178.1 Soluble domain of poliovirus core protein 3a
View Download 0.281 N/A N/A a.56.1 CO dehydrogenase ISP C-domain like
View Download 0.264 N/A N/A a.178.1 Soluble domain of poliovirus core protein 3a
View Download 0.239 N/A N/A a.56.1 CO dehydrogenase ISP C-domain like
View Download 0.233 N/A N/A a.4.1 Homeodomain-like


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle