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View Structure Prediction Details

Protein: LEUD2_ARATH
Organism: Arabidopsis thaliana
Length: 253 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LEUD2_ARATH.

Description E-value Query
Range
Subject
Range
gi|94412952 - gi|94412952|ref|ZP_01292848.1| hypothetical protein PaerP_01005243 [Pseudomonas aeruginosa PA7]
230.0 [0..1] [249..599]

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Predicted Domain #1
Region A:
Residues: [1-253]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATSQQFLNP TLFKSLASSN KNSCTLCPSP FLQLKSASTI FNYKPLTSSS ATIITRVAAS  60
   61 SSDSGESITR ETFHGLCFVL KDNIDTDQII PAEYGTLIPS IPEDREKLGS FALNGLPKFY 120
  121 NERFVVPGEM KSKYSVIIGG DNFGCGSSRE HAPVCLGAAG AKAVVAESYA RIFFRNCVAT 180
  181 GEIFPLESEV RICDECKTGD VVTIEHKEDG SSLLINHTTR KEYKLKPLGD AGPVIDAGGI 240
  241 FAYARKAGMI PSA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 57.522879
Match: 1amiA
Description: STERIC AND CONFORMATIONAL FEATURES OF THE ACONITASE MECHANISM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
3-isopropylmalate dehydratase activity 12.5837761061391 bayes_pls_golite062009
catalytic activity 0.740488970089403 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle