| Protein: | ATL48_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 349 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATL48_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
205.0 | [0..64] | [346..119] |
|
Region A: Residues: [1-84] |
1 11 21 31 41 51
| | | | | |
1 MSSVEPDMED LFQEKKRVRN PLVPLGALMT AGVLTAGLIS FRRGNSQLGQ VLMRARVVVQ 60
61 GATVALMVGT GYYYGDNPWK KLLL
|
| Detection Method: |  |
| Confidence: | 35.318759 |
| Match: | PF04588.4 |
| Description: | No description for PF04588.4 was found. |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [85-194] |
1 11 21 31 41 51
| | | | | |
1 SEIHETEALS PKSSSAATLT LMNQKDPSSS SIVSVLCLVI SGLALIIVFL GVLYLIFKFL 60
61 RKSSTLFPIP HFNYNPDLFS FSSPQLQHLF FLHDSGLDQT AIDALPVFLY
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [195-259] |
1 11 21 31 41 51
| | | | | |
1 GNVTISLEQP FDCAVCLNEF SDTDKLRLLP VCSHAFHLHC IDTWLLSNST CPLCRRSLST 60
61 SNVCY
|
| Detection Method: | |
| Confidence: | 12.045757 |
| Match: | 1iymA |
| Description: | EL5 RING-H2 domain |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.0938889867773109 | bayes_pls_golite062009 |
|
Region A: Residues: [260-349] |
1 11 21 31 41 51
| | | | | |
1 NHSETLVAPL SGHQQVDDGK ASLAKRVFSV RLGRFKSTNE SQSQRHDVKD EIGVRMPRRC 60
61 YSMGTQQYLV CDQDFVVALS SSPREGNIGR
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
