YRC Public Data Repository - Protein Structure Prediction

Protein:	RLA23_ARATH
Organism:	Arabidopsis thaliana
Length:	115 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RLA23_ARATH.

Description	E-value	Query Range	Subject Range
gi\|39582094, gi\|... - gi\|39582094\|emb\|CAE63737.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae], gi\|187032828\|em... gi\|157747115 - gi\|157747115\|ref\|XP_001668652.1\| Hypothetical protein CBG08266 [Caenorhabditis briggsae AF16]	119.0	[0..1]	[115..1]
gi\|50800573 - gi\|50800573\|ref\|XP_424134.1\| PREDICTED: hypothetical protein [Gallus gallus]	114.0	[0..1]	[115..1]
gi\|110765226, gi... - ref\|XP_392860.1\| similar to 60S acidic ribosomal protein P2 [Apis mellifera], gi\|110765226\|ref\|XP_00...	113.0	[0..1]	[115..1]
gi\|56757219 - gi\|56757219\|gb\|AAW26781.1\| SJCHGC01207 protein [Schistosoma japonicum]	113.0	[0..1]	[115..1]
gi\|68397381 - gi\|68397381\|ref\|XP_686604.1\| PREDICTED: similar to 60S acidic ribosomal protein P2 [Danio rerio]	109.0	[0..1]	[115..158]
gi\|77416939 - gi\|77416939\|gb\|ABA81865.1\| unknown [Solanum tuberosum]	108.0	[0..1]	[72..1]
RLA2_BRUMA - 60S acidic ribosomal protein P2 OS=Brugia malayi GN=rpp-2 PE=3 SV=1	108.0	[0..1]	[115..2]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVIAAFLLA KLGGNENPTS NDLKKILESV GAEIDETKID LLFSLIKDHD VTELIAAGRE  60
   61 KMSALSSGGP AVAMVAGGGG GGAASAAEPV AESKKKVEEV KDESSDDAGM MGLFD

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	17.136677
Match:	PF00428.10
Description:	No description for PF00428.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits