YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|110742984, gi...
Organism: Arabidopsis thaliana
Length: 204 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110742984, gi....

Description E-value Query
Range
Subject
Range
gi|218188460 - gi|218188460|gb|EEC70887.1| hypothetical protein OsI_02424 [Oryza sativa Indica Group]
gi|57899336, gi|... - gi|57900426|dbj|BAD87662.1| thioredoxin family Trp26-like protein [Oryza sativa Japonica Group], gi|...
318.0 [0..1] [204..1]

Back

Predicted Domain #1
Region A:
Residues: [1-204]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCTHDHNCE DHECSSDWSL YKHIDLSKVS ALNESVSGSA KSVFKAWEQR LHSSGEHLES  60
   61 NEGDPELLVF VPFTSDVKIK SISIVGGPEG TSPSKLRVFI NREGIDFSDA ESMQAVQEWE 120
  121 LAENLQGVLE YQTRYSKFQS VGNITLHFPE SFGGDTTQIR YIGFKGEATQ LKRDVVATIV 180
  181 YEIRPNPSDH KTKAETGGGF SQVE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 47.09691
Match: 1wwyA
Description: Solution structure of the DUF1000 domain of a thioredoxin-like protein 1
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle