| Protein: | gi|79313325, gi|... |
| Organism: | Arabidopsis thaliana |
| Length: | 761 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|79313325, gi|....
| Description | E-value | Query Range |
Subject Range |
|
|
468.0 | [0..1] | [761..1] |
|
|
391.0 | [0..14] | [729..127] |
|
|
382.0 | [0..8] | [758..25] |
|
Region A: Residues: [1-90] |
1 11 21 31 41 51
| | | | | |
1 MDSDLEPVAL TPQKQDSAWK HCEVYKYGDR VQMRCLYCRK MFKGGGITRV KEHLAGKKGQ 60
61 GTICDQVPDE VRLFLQQCID GTVRRQRKRR
|
| Detection Method: |  |
| Confidence: | 1.11 |
| Match: | 1uw2A |
| Description: | The structure of the zinc finger from the human spliceosomal protein U1C |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [91-149] |
1 11 21 31 41 51
| | | | | |
1 KSSPEPLPIA YFPPCEVETQ VAASSDVNNG FKSPSSDVVV GQSTGRTKQR TYRSRKNNA
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.664 | b.34.3 | Myosin S1 fragment, N-terminal domain |
| View | Download | 0.615 | g.81.1 | Description not found. |
| View | Download | 0.564 | b.34.3 | Myosin S1 fragment, N-terminal domain |
| View | Download | 0.551 | d.17.1 | Cystatin/monellin |
| View | Download | 0.544 | b.34.5 | Translation proteins SH3-like domain |
| View | Download | 0.486 | a.35.1 | lambda repressor-like DNA-binding domains |
| View | Download | 0.474 | d.17.5 | Uracil-DNA glycosylase inhibitor protein |
| View | Download | 0.438 | g.18.1 | Complement control module/SCR domain |
| View | Download | 0.432 | d.76.1 | GYF domain |
| View | Download | 0.431 | g.5.1 | Midkine |
|
Region A: Residues: [150-677] |
1 11 21 31 41 51
| | | | | |
1 FERNDLANVE VDRDMDNLIP VAISSVKNIV HPTSKEREKT VHMAMGRFLF DIGADFDAAN 60
61 SVNVQPFIDA IVSGGFGVSI PTHEDLRGWI LKSCVEEVKK EIDECKTLWK RTGCSVLVQE 120
121 LNSNEGPLIL KFLVYCPEKV VFLKSVDASE ILDSEDKLYE LLKEVVEEIG DTNVVQVITK 180
181 CEDHYAAAGK KLMDVYPSLY WVPCAAHCID KMLEEFGKMD WIREIIEQAR TVTRIIYNHS 240
241 GVLNLMRKFT FGNDIVQPVC TSSATNFTTM GRIADLKPYL QAMVTSSEWN DCSYSKEAGG 300
301 LAMTETINDE DFWKALTLAN HITAPILRVL RIVCSERKPA MGYVYAAMYR AKEAIKTNLA 360
361 HREEYIVYWK IIDRWWLQQP LYAAGFYLNP KFFYSIDEEM RSEIHLAVVD CIEKLVPDVN 420
421 IQDIVIKDIN SYKNAVGIFG RNLAIRARDT MLPAEWWSTY GESCLNLSRF AIRILSQTCS 480
481 SSIGSVRNLT SISQIYESKN SIERQRLNDL VFVQYNMRLR RIGSESSG
|
| Detection Method: | |
| Confidence: | 37.69897 |
| Match: | 2bw3A |
| Description: | Three-dimensional structure of the Hermes DNA transposase |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [678-761] |
1 11 21 31 41 51
| | | | | |
1 DDTVDPLSHS NMEVLEDWVS RNQVCIEGNG SSDWKSLEFI KRSEEVAVVI DETEDLGSGF 60
61 DDAEIFKGEK EASYEGGYSE NLFT
|
| Detection Method: | |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.365 | a.4.5 | "Winged helix" DNA-binding domain |
| View | Download | 0.347 | a.7.6 | Ribosomal protein S20 |
| View | Download | 0.327 | d.58.18 | Regulatory domain in the aminoacid metabolism |
| View | Download | 0.321 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.321 | a.179.1 | Replisome organizer (g39p helicase loader/inhibitor protein) |
| View | Download | 0.320 | a.118.14 | FliG |
| View | Download | 0.320 | a.118.14 | FliG |
| View | Download | 0.317 | a.39.1 | EF-hand |
| View | Download | 0.317 | a.39.1 | EF-hand |
| View | Download | 0.276 | a.156.1 | S13-like H2TH domain |
