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View Structure Prediction Details

Protein: gi|15240740, gi|...
Organism: Arabidopsis thaliana
Length: 386 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|15240740, gi|....

Description E-value Query
Range
Subject
Range
HLS1L_ARATH - Probable N-acetyltransferase HLS1-like OS=Arabidopsis thaliana GN=At2g23060 PE=2 SV=1
452.0 [0..8] [385..5]

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Predicted Domain #1
Region A:
Residues: [1-176]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKGFNVVVV REYDPKRDLT SVEELEESCE VGSLLVDLMG DPLARIRQSP SFHMLVAEIG  60
   61 NEIVGMIRGT IKMVTRGVNA LRQADDVSPE INTTKLAFVS GLRVSPFYRR MGIGLKLVQR 120
  121 LEEWFLRNDA VYSYVQTEND NIASVKLFTE KSGYSKFRTP TFLVNPVFNH RVTVSR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.0
Match: 2bl1A
Description: Crystal structure of a putative phosphinothricin Acetyltransferase ( PA4866) from Pseudomonas aeruginosa PAC1
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [177-386]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RVKIIKLAPS DAESLYRNRF STTEFFPSDI NSILTNKLSL GTYLAVPRGG DNVSGSLPDQ  60
   61 TGSWAVISIW NSKDVYRLQV KGASRLKRML AKSTRVFDGA FPFLKIPSFP NLFKSFAMHF 120
  121 MYGIGGEGPR AAEMVEALCS HAHNLARKSG CAVVAAEVAS CEPLRVGIPH WKVLSPEDLW 180
  181 CLKRLRYDDD GVDWTKSPPG LSIFVDPREI 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle