YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|28951009, gi|...
Organism: Arabidopsis thaliana
Length: 426 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28951009, gi|....

Description E-value Query
Range
Subject
Range
gi|6563397 - gi|6563397|gb|AAF15891.2|AF204805_1 NosA [Nostoc sp. GSV224]
332.0 [0..2] [423..3245]

Back

Predicted Domain #1
Region A:
Residues: [1-426]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTMKVETIG KEIIKPSATT PTDLSTLQLS IMDILMPPVY AVAFLFYTKD DLISQEQTSH  60
   61 TLKTSLSEIL TKFHPLAGRV NGVTIKSTDE GAVFVEARVD NCDLSGFLRS PDTESLKQLL 120
  121 PVDDEPAPTW PLLLVKATYF RCGGMAIGLC ISHRLADAAS LSIFLQAWAA TARGESDLVA 180
  181 SPDFCSTKLY PAANEAIKIP GEVVNRTSVT KRFVFVASKI EELRNKVASD VVPRPTRVQS 240
  241 VTSLIWKCVV TASTDTIREK ALFQPANLRT KIPSLLSENQ IGNLLFNSLI LDGKAGMDIV 300
  301 ETVKELQKRA EDLSGLVQDE EGSSMTIGWR LFGEIINSKF NREDHDMHSV TSWCKIPLYD 360
  361 ACFGWGSPVW VAGSVSPNLD YVTVLIDSKD GQGIEAWVTL PQENMLLLEQ STELLAFASP 420
  421 NPSVLI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 53.69897
Match: 2bghA
Description: Crystal structure of Vinorine Synthase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle