| Protein: | VSR5_ARATH |
| Organism: | Arabidopsis thaliana |
| Length: | 618 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VSR5_ARATH.
| Description | E-value | Query Range |
Subject Range |
|
|
344.0 | [0..1] | [613..1] |
|
Region A: Residues: [1-185] |
1 11 21 31 41 51
| | | | | |
1 MSPSNKGTVL ALILALTMVV VNGFSSRFFV EKSSLTVLNS WEMGAKHDAA IANFGLPKYG 60
61 GFMIGSVVYA GQDAYGCNSF NKTFNTKSPY PKILLIDRGV CNFALKIWNG QQSGAAAVLL 120
121 ADNIVEPLIT MDTPQDEDPD FIDKVKIPSA LILRSFGDSL KKALKRGEEV ILKMDWSESI 180
181 PNPDE
|
| Detection Method: |  |
| Confidence: | 2.15 |
| Match: | 2ootA |
| Description: | No description for 2ootA was found. |
|
Region A: Residues: [186-618] |
1 11 21 31 41 51
| | | | | |
1 RVEYELWANT NDECGVHCDK QIDFIKNFKG MAQILEKGGY TLFRPHYISW VCPKELLLSK 60
61 QCRTQCINQG RYCALDTKQE FEDGYNGKDV VYENLRQLCV HKVAKEKNTS WVWWDYVTDF 120
121 NIRCSMKEKK YSRECAETIV ESLGLSLEKI KKCIGDPDAD VENEVLKAEE AFQLGQENRG 180
181 IVTIFPTLMI NNAQYRGKLE RTAVLKAICS GFKERTEPSI CLNSDIETNE CLIENGGCWQ 240
241 DKRSNVTACK DTFRGRVCEC PVVDGVQYKG DGYTSCKPYG PARCSMNNGD CWSETRKGLT 300
301 FSSCSDSETS GCRCPLGFLG DGLKCEDIDE CKEKSACKCD GCKCKNNWGG YECKCSNNSI 360
361 YMKEEDTCIE RRSGSRSRGL FTIVVLTAIA GISLGAYIFY KYHLQSYMDS EIVSIMSQYI 420
421 PLDSQSINQD SFK
|
| Detection Method: | |
| Confidence: | 23.221849 |
| Match: | 1n7dA |
| Description: | Low density lipoprotein (LDL) receptor YWTD domain; Low density lipoprotein (LDL) receptor, different EGF domains; Ligand-binding domain of low-density lipoprotein receptor |
Matching Structure (courtesy of the PDB): |
|
| Term | Confidence | Notes |
| binding | 0.286076792172079 | bayes_pls_golite062009 |
| protein binding | 0.14494900666454 | bayes_pls_golite062009 |
