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View Structure Prediction Details

Protein: ERF79_ARATH
Organism: Arabidopsis thaliana
Length: 185 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ERF79_ARATH.

Description E-value Query
Range
Subject
Range
gi|109693570 - gi|109693570|gb|ABG38530.1| C-repeat/DRE binding factor 1 [Cucumis sativus]
gi|215794504 - gi|215794504|gb|ACJ70134.1| CBF1 [Olimarabidopsis pumila]
DRE1B_ARATH - Dehydration-responsive element-binding protein 1B OS=Arabidopsis thaliana GN=DREB1B PE=2 SV=2
167.0 [0..8] [183..24]
gi|71983373 - gi|71983373|gb|AAZ57434.1| CRT/DRE binding factor 1 [Iris lactea var. chinensis]
166.0 [0..8] [183..24]
gi|41351817 - gi|41351817|gb|AAS00621.1| DREB1 [Thellungiella salsuginea]
165.0 [0..8] [183..27]
gi|66269982 - gi|66269982|gb|AAY43345.1| CBF-like protein [Brassica rapa subsp. pekinensis]
164.0 [0..8] [183..26]

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Predicted Domain #1
Region A:
Residues: [1-110]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNITMGLKP DPVAPTNPTH HESNAAKEIR YRGVRKRPWG RYAAEIRDPV KKTRVWLGTF  60
   61 DTAQQAARAY DAAARDFRGV KAKTNFGVIV GSSPTQSSTV VDSPTAARFI 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 21.30103
Match: 2gccA
Description: SOLUTION STRUCTURE OF THE GCC-BOX BINDING DOMAIN, NMR, MINIMIZED MEAN STRUCTURE
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [111-185]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPPHLELSLG GGGACRRKIP LVHPVYYYNM ATYPKMTTCG VQSESETSSV VDFEGGAGKI  60
   61 SPPLDLDLNL APPAE

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle