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View Structure Prediction Details

Protein: NPY4_ARATH
Organism: Arabidopsis thaliana
Length: 481 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NPY4_ARATH.

Description E-value Query
Range
Subject
Range
gi|218193389 - gi|218193389|gb|EEC75816.1| hypothetical protein OsI_12774 [Oryza sativa Indica Group]
gi|108710040 - gi|108710040|gb|ABF97835.1| transposon protein, putative, Mutator sub-class, expressed [Oryza sativa...
411.0 [0..1] [477..1]

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Predicted Domain #1
Region A:
Residues: [1-123]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFMKLGTKP DSFLSKGDNV RYVTNELETE IIIIIGNVKF YLHKFPLLSK SGFLQKHIAT  60
   61 SKNEEEKKNQ IDEIDISEIP GGSVAFEICV KFCYGITVTL NAYNVVAVRC AAEFLEMNET 120
  121 FEK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 23.522879
Match: 2nn2A
Description: No description for 2nn2A was found.

Predicted Domain #2
Region A:
Residues: [124-233]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SNLVYKIDVF LNSTIFRSWK DSIIVLQTTK DLLSDDSEEL VKRCLGSIAS TASIDTSKVK  60
   61 WSYTYNRKKK LEKVRKPEDG VPKDWWVEDL CELHIDLYKQ AIKAIKNRGK 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.09691
Match: 2eqxA
Description: No description for 2eqxA was found.

Predicted Domain #3
Region A:
Residues: [234-481]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPSNVIGEAL HAYAIRRIAG FSKESMQLID RSLINTIIEL LPDEKGNISS SFLTKLHRAS  60
   61 IFLGCEETVK EKLKKRVSEQ LEETTVNDIL MYDLDMVQSL VKEFMNRDPK THSKVSVAKL 120
  121 IDGYLAEKSR DPNLPLQNFL SLAETLSSFP RHSHDVLYRA IDMFLKEHSG ISKSEKKRVC 180
  181 GLMDCRKLSA EACEHAVQNE RLPMRVIVQV LFFEQIRANG SSTGYSTPEL TTTTLNTEDD 240
  241 EWDHEKEF

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 102.366532
Match: PF03000.5
Description: No description for PF03000.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle