YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: ANR1_ARATH
Organism: Arabidopsis thaliana
Length: 234 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ANR1_ARATH.

Description E-value Query
Range
Subject
Range
gi|62122355 - gi|62122355|dbj|BAD93172.1| MADS-box transcription factor GbMADS8 [Ginkgo biloba]
221.0 [0..1] [233..1]

Back

Predicted Domain #1
Region A:
Residues: [1-79]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRGKIVIRR IDNSTSRQVT FSKRRSGLLK KAKELSILCD AEVGVIIFSS TGKLYDYASN  60
   61 SSMKTIIERY NRVKEEQHQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.154902
Match: 1tqeP
Description: Mechanism of recruitment of class II histone deacetylases by myocyte enhancer factor-2
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 1.0368771990474 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [80-234]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LLNHASEIKF WQREVASLQQ QLQYLQECHR KLVGEELSGM NANDLQNLED QLVTSLKGVR  60
   61 LKKDQLMTNE IRELNRKGQI IQKENHELQN IVDIMRKENI KLQKKVHGRT NAIEGNSSVD 120
  121 PISNGTTTYA PPQLQLIQLQ PAPREKSIRL GLQLS

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 22.853872
Match: PF01486.8
Description: No description for PF01486.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle