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View Structure Prediction Details

Protein: gi|28394015, gi|...
Organism: Arabidopsis thaliana
Length: 388 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28394015, gi|....

Description E-value Query
Range
Subject
Range
gi|20466726, gi|... - gi|23198206|gb|AAN15630.1| unknown protein [Arabidopsis thaliana], gi|20466726|gb|AAM20680.1| unknow...
611.0 [0..1] [386..1]
gi|215695200, gi... - gi|50925145|ref|XP_472878.1| OSJNBa0044K18.7 [Oryza sativa (japonica cultivar-group)], gi|38605764|e...
gi|116309905, gi... - gi|125548719|gb|EAY94541.1| hypothetical protein OsI_16317 [Oryza sativa Indica Group], gi|116309905...
605.0 [0..4] [388..5]
gi|45433905 - gi|45433905|emb|CAF33485.2| putative N-acetylglucosaminyltransferase III [Cucumis sativus]
597.0 [0..4] [388..10]
gi|61845111 - gi|61845111|emb|CAI70376.1| beta 1,4 N-acetylglucosaminyltransferase [Populus alba x Populus tremula...
589.0 [0..4] [388..6]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDGYRSSKK TDTICEDVCG QEGSRAGKAI SRLRCVLRGL DFKTFLFLFT LLPLFIFGIY  60
   61 LHGQKITYFL RPLWESPPKP FNILPHYYHE NTSMELLCNL HG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [103-244]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 WKLRESPRRV FDAALFSNEI DMLTLRWNEL NPYITQFVLL ESNSTFTGLS KQLAFADNRE  60
   61 KNFKFVEPRL TYGNVGGRFK KGENPFVEES FQRLALDQLI KLAGIKEDDL LIMSDVDEIP 120
  121 SGHTINLLRW CDGFPPILHL QL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.803 N/A N/A c.58.1 Aminoacid dehydrogenase-like, N-terminal domain

Predicted Domain #3
Region A:
Residues: [245-388]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNYLYSYEYY VDSKSWRASV HLYKPGKTRC AHFRQSNNLL TDSGWHCSFC FRHINDFVFK  60
   61 MKAYSHTDRV RFLHYLNPRR IQDIICKGTD LFDMLPEEHT FREIIGKLGP IPRSYSAVHL 120
  121 PGYLIQNADS YKYLLPGNCK RESG

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle