YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|7268059, gi\|2...
Organism:	Arabidopsis thaliana
Length:	109 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|7268059, gi|2....

Description	E-value	Query Range	Subject Range
gi\|85118928 - gi\|85118928\|ref\|XP_965543.1\| hypothetical protein NCU01912 [Neurospora crassa OR74A] gi\|32417248, gi\|... - gi\|32417248\|ref\|XP_329102.1\| hypothetical protein [Neurospora crassa], gi\|28927353\|gb\|EAA36307.1\| hy...	95.0	[0..3]	[108..1039]
gi\|109081233 - gi\|109081233\|ref\|XP_001087398.1\| PREDICTED: similar to cell cycle progression 1 isoform 2 [Macaca mu...	85.0	[0..5]	[99..603]
gi\|23497477, gi\|... - gi\|23509629\|ref\|NP_702296.1\| hypothetical protein PF14_0407 [Plasmodium falciparum 3D7], gi\|23497477...	83.0	[0..4]	[108..3253]
gi\|49146397, gi\|... - gi\|49146397\|ref\|YP_025505.1\| putative phage-related minor tail protein [Caedibacter taeniospiralis],...	78.0	[0..3]	[109..51]
gi\|23025755 - gi\|23025755\|gb\|AAH34914.1\| CCPG1 protein [Homo sapiens]	78.0	[0..5]	[98..323]
gi\|114657183 - gi\|114657183\|ref\|XP_001171080.1\| PREDICTED: cell cycle progression 1 isoform 3 [Pan troglodytes]	77.0	[0..5]	[98..323]

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Predicted Domain #1

Region A:
Residues: [1-109]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQQQFNAGQ NRGQAQEKAE QWTESAKQTA QSACDKTADL TQSARDKAAD LTQSARDKTA  60
   61 DGSHSANKSA QHNQEQAAGL FGQTGESVKN MAQGALDGVK NSLGMNEKK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.49
Match:	1xq8A
Description:	Human micelle-bound alpha-synuclein
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits