YRC Public Data Repository - Protein Structure Prediction

Protein:	PHS1_ARATH
Organism:	Arabidopsis thaliana
Length:	962 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PHS1_ARATH.

Description	E-value	Query Range	Subject Range
PHSL_VICFA - Alpha-1,4 glucan phosphorylase L isozyme, chloroplastic/amyloplastic OS=Vicia faba GN=PHO1 PE=2 SV=2 gi\|1616637 - gi\|1616637\|emb\|CAA85354.1\| alpha-1,4 glucan phosphorylase, L isoform precursor [Vicia faba var. mino...	1064.0	[0..3]	[961..5]
gi\|114681358 - gi\|114681358\|ref\|XP_525293.2\| PREDICTED: brain glycogen phosphorylase [Pan troglodytes]	1057.0	[0..15]	[961..104]
gi\|109093168 - gi\|109093168\|ref\|XP_001100456.1\| PREDICTED: brain glycogen phosphorylase isoform 3 [Macaca mulatta]	1048.0	[0..70]	[961..1]
gi\|50054411, gi\|... - gi\|50054411\|ref\|NP_001001904.1\| brain glycogen phosphorylase [Xenopus (Silurana) tropicalis], gi\|463...	1046.0	[0..70]	[962..1]
gi\|62087740 - gi\|62087740\|dbj\|BAD92317.1\| brain glycogen phosphorylase variant [Homo sapiens]	1046.0	[0..62]	[961..15]
gi\|147898991, gi... - gi\|47940264\|gb\|AAH72163.1\| MGC80198 protein [Xenopus laevis], gi\|147898991\|ref\|NP_001085064.1\| hypot...	1045.0	[0..70]	[962..1]
gi\|18875342, gi\|... - gi\|18875342\|ref\|NP_573461.1\| liver glycogen phosphorylase [Mus musculus], gi\|15489037\|gb\|AAH13636.1\|...	1045.0	[0..70]	[961..1]

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Predicted Domain #1

Region A:
Residues: [1-962]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTMRISGVS TGAEVLIQCN SLSSLVSRRC DDGKWRTRMF PARNRDLRPS PTRRSFLSVK  60
   61 SISSEPKAKV TDAVLDSEQE VFISSMNPFA PDAASVASSI KYHAEFTPLF SPEKFELPKA 120
  121 FFATAQSVRD ALIMNWNATY EYYNRVNVKQ AYYLSMEFLQ GRALSNAVGN LGLNSAYGDA 180
  181 LKRLGFDLES VASQEPDPAL GNGGLGRLAS CFLDSMATLN YPAWGYGLRY KYGLFKQRIT 240
  241 KDGQEEAAED WLELSNPWEI VRNDVSYPIK FYGKVVFGSD GKKRWIGGED IVAVAYDVPI 300
  301 PGYKTKTTIN LRLWSTKAPS EDFDLSSYNS GKHTEAAEAL FNAEKICFVL YPGDESTEGK 360
  361 ALRLKQQYTL CSASLQDIVA RFETRSGGNV NWEEFPEKVA VQMNDTHPTL CIPELMRILM 420
  421 DLKGLSWEDA WKITQRTVAY TNHTVLPEAL EKWSLELMEK LLPRHVEIIE KIDEELVRTI 480
  481 VSEYGTADPD LLEEKLKAMR ILENVELPSA FADVIVKPVN KPVTAKDAQN GVKTEQEEEK 540
  541 TAGEEEEDEV IPEPTVEPPK MVRMANLAVV GGHAVNGVAE IHSEIVKQDV FNDFVQLWPE 600
  601 KFQNKTNGVT PRRWIRFCNP YLSDIITNWI GTEDWVLNTE KVAELRKFAD NEDLQSEWRA 660
  661 AKKKNKLKVV SLIKERTGYT VSPDAMFDIQ IKRIHEYKRQ LLNILGIVYR YKKMKEMSAS 720
  721 EREKAFVPRV CIFGGKAFAT YVQAKRIVKF ITDVASTINH DPEIGDLLKV IFVPDYNVSV 780
  781 AELLIPASEL SQHISTAGME ASGTSNMKFS MNGCVLIGTL DGANVEIREE VGEENFFLFG 840
  841 AKADQIVNLR KERAEGKFVP DPTFEEVKKF VGSGVFGSNS YDELIGSLEG NEGFGRADYF 900
  901 LVGKDFPSYI ECQEKVDEAY RDQKRWTRMS IMNTAGSFKF SSDRTIHEYA KDIWNIKQVE 960
  961 LP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2zb2A
Description:	No description for 2zb2A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits