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View Structure Prediction Details

Protein: TLP1_ARATH
Organism: Arabidopsis thaliana
Length: 455 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TLP1_ARATH.

Description E-value Query
Range
Subject
Range
TLP13_ORYSJ - Tubby-like F-box protein 13 OS=Oryza sativa subsp. japonica GN=TULP13 PE=2 SV=1
639.0 [0..1] [455..1]

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Predicted Domain #1
Region A:
Residues: [1-103]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFRSIVRDV RDSIGSLSRR SFDFKLSSLN KEGGKSRGSV QDSHEEQLVV TIQETPWANL  60
   61 PPELLRDVIK RLEESESVWP ARRHVVACAS VCRSWRDMCK EIV

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.87
Match: 2e31A
Description: No description for 2e31A was found.

Predicted Domain #2
Region A:
Residues: [104-455]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QSPELSGKIT FPVSLKQPGP RDATMQCFIK RDKSNLTYHL YLCLSPALLV ENGKFLLSAK  60
   61 RIRRTTYTEY VISMHADTIS RSSNTYIGKI RSNFLGTKFI IYDTQPAYNS NIARAVQPVG 120
  121 LSRRFYSKRV SPKVPSGSYK IAQVSYELNV LGTRGPRRMH CAMNSIPASS LAEGGTVPGQ 180
  181 PDIIVPRSIL DESFRSITSS SSRKITYDYS NDFSSARFSD ILGPLSEDQE VVLEEGKERN 240
  241 SPPLVLKNKP PRWHEQLQCW CLNFRGRVTV ASVKNFQLIA ANQPQPQPQP QPQPQPLTQP 300
  301 QPSGQTDGPD KIILQFGKVG KDMFTMDFRY PLSAFQAFAI CLSSFDTKLA CE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 108.0
Match: 1s31A
Description: Crystal Structure Analysis of the human Tub protein (isoform a) spanning residues 289 through 561
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle