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View Structure Prediction Details

Protein: TBL44_ARATH
Organism: Arabidopsis thaliana
Length: 402 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TBL44_ARATH.

Description E-value Query
Range
Subject
Range
gi|21553643 - gi|21553643|gb|AAM62736.1| unknown [Arabidopsis thaliana]
487.0 [0..1] [402..1]
gi|51091192, gi|... - gi|51091192|dbj|BAD35885.1| lustrin A-like [Oryza sativa Japonica Group], gi|51091163|dbj|BAD35858.1...
gi|125554485 - gi|125554485|gb|EAZ00091.1| hypothetical protein OsI_22096 [Oryza sativa Indica Group]
472.0 [0..24] [401..454]

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Predicted Domain #1
Region A:
Residues: [1-88]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSLLPLLGI SVVSAIFFLV LQQPEQSSSA IILSLKKRHG SSSGSSGNQY SSSRPSAGFQ  60
   61 GNRSTCSLFL GTWVRDNSYP LYKPADCP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.547 g.53.1 TAZ domain
View Download 0.547 g.53.1 TAZ domain
View Download 0.478 g.53.1 TAZ domain
View Download 0.478 g.53.1 TAZ domain
View Download 0.379 g.53.1 TAZ domain
View Download 0.379 g.53.1 TAZ domain
View Download 0.335 g.53.1 TAZ domain
View Download 0.335 g.53.1 TAZ domain
View Download 0.296 a.204.1 Description not found.
View Download 0.250 a.60.6 DNA polymerase beta, N-terminal domain-like

Predicted Domain #2
Region A:
Residues: [89-217]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GVVEPEFDCQ MYGRPDSDYL KYRWQPQNCN LPTFNGAQFL LKMKGKTIMF AGDSLGKNQW  60
   61 ESLICLIVSS APSTRTEMTR GLPLSTFRFL DYGITMSFYK APFLVDIDAV QGKRVLKLDE 120
  121 ISGNANAWH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.731 N/A N/A d.312.1 Description not found.
View Download 0.683 N/A N/A d.312.1 Description not found.
View Download 0.669 N/A N/A d.18.1 ssDNA-binding transcriptional regulator domain
View Download 0.636 N/A N/A d.109.1 Actin depolymerizing proteins
View Download 0.636 N/A N/A d.109.1 Actin depolymerizing proteins
View Download 0.611 N/A N/A d.18.1 ssDNA-binding transcriptional regulator domain
View Download 0.561 N/A N/A c.2.1 NAD(P)-binding Rossmann-fold domains
View Download 0.467 N/A N/A b.60.1 Lipocalins
View Download 0.364 N/A N/A b.71.1 Glycosyl hydrolase domain
View Download 0.319 N/A N/A a.73.1 Retrovirus capsid protein, N-terminal core domain
View Download 0.252 N/A N/A c.47.1 Thioredoxin-like
View Download 0.248 N/A N/A c.97.1 Cytidine deaminase-like
View Download 0.241 N/A N/A c.3.1 FAD/NAD(P)-binding domain

Predicted Domain #3
Region A:
Residues: [218-402]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DADLLIFNTG HWWSHTGSMQ GWDLIQSGNS YYQDMDRFVA MEKALRTWAY WVETHVDRSR  60
   61 TQVLFLSISP THDNPSDWAA SSSSGSKNCY GETEPITGTA YPVSSYTDQL RSVIVEVLHG 120
  121 MHNPAFLLDI TLLSSLRKDG HPSVYSGLIS GSQRSRPDQS ADCSHWCLPG LPDTWNQLLY 180
  181 TLLIY

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 70.920819
Match: PF03005.6
Description: No description for PF03005.6 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle