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View Structure Prediction Details

Protein: RID3_ARATH
Organism: Arabidopsis thaliana
Length: 438 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RID3_ARATH.

Description E-value Query
Range
Subject
Range
gi|186464325, gi... - gi|23128981|ref|ZP_00110817.1| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi|18668187...
478.0 [0..3] [438..1226]

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Predicted Domain #1
Region A:
Residues: [1-345]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEITVIASSS IDEGIGSWDL KTGTEQLQFK PCASPAHGLT AVGEKFLASS QLSARNTSGS  60
   61 IFYWSWTKPQ AEVKSYPVEP IKALAANNEG TYLVGGGISG DIYLWEVATG KLLKKWHGHY 120
  121 RSVTCLVFSG DDSLLVSGSQ DGSIRVWSLI RLFDDFQRQQ GNTLYEHNFN EHTMSVTDIV 180
  181 IDYGGCNAVI ISSSEDRTCK VWSLSRGKLL KNIIFPSVIN ALALDPGGCV FYAGARDSKI 240
  241 YIGAINATSE YGTQVLGSVS EKGKAITCLA YCADGNLLIS GSEDGVVCVW DPKSLRHVRT 300
  301 LIHAKGSRKG PVNNIQIVRK TIVANSNKTQ VSWKSRGALI PPPLE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 68.69897
Match: 2gnqA
Description: No description for 2gnqA was found.

Predicted Domain #2
Region A:
Residues: [346-438]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KYERPVEDTM DGIVTVDPPP FSDVPVYSSF LSADLIDEQV KELQQQGSAA TEMEMERLKL  60
   61 EYKRSLQMNE QWQKNYENLL QVVMEEEQIG GTN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.522879
Match: 2oajA
Description: No description for 2oajA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle