YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: GDL2_ARATH
Organism: Arabidopsis thaliana
Length: 370 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GDL2_ARATH.

Description E-value Query
Range
Subject
Range
gi|21593234 - gi|21593234|gb|AAM65183.1| lipase, putative [Arabidopsis thaliana]
320.0 [0..1] [369..1]

Back

Predicted Domain #1
Region A:
Residues: [1-370]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLSLHSHS FLLVLLPFIL ILRQNLAVAG GCQVPPVIFN FGDSNSDTGG LVAGLGYSIG  60
   61 LPNGRSFFQR STGRLSDGRL VIDFLCQSLN TSLLNPYLDS LVGSKFQNGA NFAIVGSSTL 120
  121 PRYVPFALNI QLMQFLHFKS RALELASISD PLKEMMIGES GFRNALYMID IGQNDIADSF 180
  181 SKGLSYSRVV KLIPNVISEI KSAIKILYDE GGRKFWVHNT GPLGCLPQKL SMVHSKGFDK 240
  241 HGCLATYNAA AKLFNEGLDH MCRDLRTELK EANIVYVDIY AIKYDLIANS NNYGFEKPLM 300
  301 ACCGYGGPPY NYNVNITCGN GGSKSCDEGS RFISWDGIHY TETANAIVAM KVLSMQHSTP 360
  361 PTPFHFFCGG 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.24
Match: 1escA
Description: THE MOLECULAR MECHANISM OF ENANTIORECOGNITION BY ESTERASES
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
binding 0.471286748048633 bayes_pls_golite062009
catalytic activity 0.319044203629006 bayes_pls_golite062009
protein binding 0.0277911089352154 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle