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View Structure Prediction Details

Protein: PDCB2_ARATH
Organism: Arabidopsis thaliana
Length: 194 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PDCB2_ARATH.

Description E-value Query
Range
Subject
Range
gi|21592859 - gi|21592859|gb|AAM64809.1| unknown [Arabidopsis thaliana]
189.0 [0..13] [194..13]

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Predicted Domain #1
Region A:
Residues: [1-101]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPLVLYLLT LLMAGHTSAS WCVCKTGLSD SVLQKTLDYA CGNGADCNPT HPKGSCFNPD  60
   61 NVRAHCNYAV NSFFQKKGQA SESCNFTGTA TLTTTDPSYT G

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 42.070581
Match: PF07983.4
Description: No description for PF07983.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [102-194]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CAFPSSASGS SGSGSTTVTP GKNSPKGSNS ITTFPGGNSP YSGTPSTGLL GGNITDATGT  60
   61 GLNPDYSTES SGFALYYSNN LLLTGFCSLV MML

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle