YRC Public Data Repository - Protein Structure Prediction

Protein:	TTL1_ARATH
Organism:	Arabidopsis thaliana
Length:	699 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TTL1_ARATH.

Description	E-value	Query Range	Subject Range
TTL3_ARATH - Inactive TPR repeat-containing thioredoxin TTL3 OS=Arabidopsis thaliana GN=TTL3 PE=1 SV=2	305.0	[0..4]	[698..8]
gi\|33640682, gi\|... - gi\|33862569\|ref\|NP_894129.1\| TPR repeat-containing protein [Prochlorococcus marinus str. MIT 9313], ...	280.0	[0..146]	[693..459]
gi\|113475191, gi... - gi\|113475191\|ref\|YP_721252.1\| glycosyl transferase family protein [Trichodesmium erythraeum IMS101],...	278.0	[0..115]	[693..5]
gi\|73670079, gi\|... - gi\|73670079\|ref\|YP_306094.1\| TPR repeat-containing protein [Methanosarcina barkeri str. Fusaro], gi\|...	277.0	[0..105]	[693..94]
gi\|66347873, gi\|... - gi\|66347873\|ref\|NP_001018115.1\| O-linked N-acetylglucosamine transferase isoform 2 [Danio rerio], gi...	269.0	[0..81]	[651..1]
gi\|76659271 - gi\|76659271\|ref\|XP_884992.1\| PREDICTED: similar to O-linked GlcNAc transferase isoform 1 isoform 7 [...	269.0	[0..92]	[652..22]

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Predicted Domain #1

Region A:
Residues: [1-115]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPKSVKPISE SDKLSDHLRD SSLTSEINKP DFRELDLGSP VSPLRSQPRG LTTTTTTTTT  60
   61 SSSSSSSSGS VTGRIKHAPV IGRSNSVRSQ SNSSSGNNNL RPRSDSATTS SSSHS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.12
Match:	1pk8A
Description:	Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [116-225]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPLLSSSSSS ATSPAPTSPA NVLPTGNICP SGKIQITGMT QSRSRSDVLG SGTGTYGHGS  60
   61 IMRGGGISPA KPTNTGGGSN SPVNVGSSSR SSSTVATGET PIWKKAILGS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [226-699]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DSEEVKRVGN EMYRKGLFNE ALKLYDRAIA LSPTNAAYRS NRAAALIGLS RIGEAVKECE  60
   61 DAVRSDPNYG RAHHRLALLL IRLGQVNSAR KHLCFLGRPS DPMELQKLEA VEKHLIKCVD 120
  121 ARRVTDWKTV LIEADAAIVS GADFSPQLFM CKVEAFLKLH RLDDAQSKLL EVPKVEPFPV 180
  181 SCSQTRFSGM ACEAYIYFVK AQIEMALGRF ENAVMAAEKA SQIDPRCNEV AMLHNTVTLV 240
  241 ARARARGNDL YKSERYTEAS SAYAEGLRLD PCNAILYCNR AACWFKLGMW ERSIEDCNQA 300
  301 LRYQPSYTKP LLRRAASNSK MERWGAAVSD YEALIRELPH DKEVAESLFH AQVALKKSRG 360
  361 EEVLNMEFGG EVEEIYSLEQ FKSAMNLPGV SVIHFSTASD HQCKQISPFV DSLCTRYPSI 420
  421 HFLKVDIDKC PSIGNAENVR VVPTVKIYKN GSRVKEIVCP SKEVLEYSVR HYSG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	2gw1A
Description:	No description for 2gw1A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits