YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|26453126, gi\|...
Organism:	Arabidopsis thaliana
Length:	95 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|26453126, gi|....

Description	E-value	Query Range	Subject Range
gi\|55619971 - gi\|55619971\|ref\|XP_516338.1\| PREDICTED: hypothetical protein [Pan troglodytes]	134.0	[0..7]	[95..144]
gi\|109052667 - gi\|109052667\|ref\|XP_001093525.1\| PREDICTED: similar to CG17996-PA [Macaca mulatta]	124.0	[0..7]	[95..164]
gi\|29145107 - gi\|29145107\|gb\|AAH48547.1\| Cmc1 protein [Mus musculus]	121.0	[0..7]	[95..54]
CMC1 - COX assembly mitochondrial protein homolog (S. cerevisiae)	112.0	[0..7]	[95..7]
gi\|57103840 - gi\|57103840\|ref\|XP_542752.1\| PREDICTED: similar to CG17996-PA [Canis familiaris]	112.0	[0..7]	[95..7]
gi\|109485474, gi... - gi\|62654463\|ref\|XP_343502.2\| PREDICTED: similar to CG17996-PA [Rattus norvegicus], gi\|149018298\|gb\|E...	111.0	[0..7]	[95..7]
gi\|190659435, gi... - gi\|194884395\|ref\|XP_001976248.1\| GG20112 [Drosophila erecta], gi\|190659435\|gb\|EDV56648.1\| GG20112 [D... CG17996-PA - This gene is referred to in FlyBase by the symbol Dmel\CG17996 (CG17996, FBgn0032595). It is a prote...	111.0	[0..7]	[95..22]
COXM1_BOVIN - COX assembly mitochondrial protein homolog OS=Bos taurus GN=CMC1 PE=3 SV=1	111.0	[0..7]	[95..7]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSYVEQARE NHVKKKVEEA LRSKMKAKAL MECDQYVSKY AQCATGRTFS VVWTCRKQAR  60
   61 ELNTCLHQFT NDNVLEEMKR AYMVQEEGKV SASAI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.897	a.7.6	Ribosomal protein S20

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits